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Crystallographic and Single Crystal Spectral Analysis of the Peroxidase Ferryl Intermediate
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 6 277.2 10uL (350-400uM protein), 22% MPD, 50mM tris phoshate buffer pH 6.0, VAPOR DIFFUSION, SITTING DROP, temperature 277.2K
Crystal Properties Matthews coefficient Solvent content 2.66 59.93
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 107.447 α = 90 b = 74.754 β = 90 c = 50.931 γ = 90
Symmetry Space Group P 21 21 21
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 65 CCD 2009-11-01 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON SSRL BEAMLINE BL9-2 SSRL BL9-2
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) R Sym I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 1.4 50 95.3 0.089 0.089 12.4 3.1 77557
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R Merge I (Observed) R-Sym I (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1.4 1.42 95 0.519 0.519 2.4 3.1
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (All) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION AB INITIO FREE R 1.4 50 74275 91.1 0.1146 0.1146 0.1389 RANDOM
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3]
Coordinate Error Structure Solution Method Refinement High Resolution Refinement Low Resolution 7 2206.97 2964
RMS Deviations Key Refinement Restraint Deviation s_approx_iso_adps 0.103 s_zero_chiral_vol 0.071 s_non_zero_chiral_vol 0.065 s_anti_bump_dis_restr 0.05 s_similar_adp_cmpnt 0.046 s_angle_d 0.031 s_from_restr_planes 0.0289 s_bond_d 0.02 s_rigid_bond_adp_cmpnt 0.004 s_similar_dist
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 2356 Nucleic Acid Atoms Solvent Atoms 630 Heterogen Atoms 48
Software Software Software Name Purpose MOSFLM data reduction SHELX model building SHELXL-97 refinement HKL-2000 data scaling SHELX phasing