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The structure of a putative glutathione S-transferase from Corynebacterium glutamicum
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION, SITTING DROP 7.4 278 0.2M sodium potassium tartrate, 20% PEG 3350, trypsin in situ, pH 7.4, VAPOR DIFFUSION, SITTING DROP, temperature 278K
Crystal Properties Matthews coefficient Solvent content 3.21 61.69
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 167.245 α = 90 b = 167.245 β = 90 c = 226.855 γ = 90
Symmetry Space Group I 4 2 2
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 CCD ADSC QUANTUM 315r 2010-02-16 M MAD
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON APS BEAMLINE 19-ID 0.97948, 0.97935 APS 19-ID
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 2.1 50 99.9 0.079 8.4 11 92656 92656 -3 53.5
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R Merge I (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 2.1 2.14 100 0.667 11.1 4558
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Resolution (High) Resolution (Low) Number Reflections (All) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (All) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION MAD THROUGHOUT 2.1 45.45 92656 92656 4633 99.84 0.152 0.152 0.151 0.1647 0.176 0.1873 RANDOM 26.273
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] -0.26 -0.26 0.51
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 36.837 r_dihedral_angle_4_deg 16.437 r_dihedral_angle_3_deg 12.449 r_dihedral_angle_1_deg 5.899 r_scangle_it 3.492 r_scbond_it 2.195 r_angle_refined_deg 1.448 r_mcangle_it 1.417 r_angle_other_deg 0.943 r_mcbond_it 0.778
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 36.837 r_dihedral_angle_4_deg 16.437 r_dihedral_angle_3_deg 12.449 r_dihedral_angle_1_deg 5.899 r_scangle_it 3.492 r_scbond_it 2.195 r_angle_refined_deg 1.448 r_mcangle_it 1.417 r_angle_other_deg 0.943 r_mcbond_it 0.778 r_mcbond_other 0.204 r_chiral_restr 0.093 r_bond_refined_d 0.017 r_gen_planes_refined 0.007 r_bond_other_d 0.001 r_gen_planes_other 0.001
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 7122 Nucleic Acid Atoms Solvent Atoms 859 Heterogen Atoms 76
Software Software Software Name Purpose DENZO data reduction SCALEPACK data scaling MLPHARE phasing DM phasing REFMAC refinement PDB_EXTRACT data extraction SBC-Collect data collection HKL-3000 data reduction HKL-3000 data scaling HKL-3000 phasing SHELXD phasing SHELXE model building SOLVE phasing RESOLVE phasing ARP/wARP model building CCP4 phasing O model building Coot model building