☰ Navigation Tabs
Crystal structure of the Yeast Sac1: Implications for its phosphoinositide phosphatase function
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION, HANGING DROP 7.5 298 1.5 M NaCl, 0.55 M sodium Citrate, pH 7.5., VAPOR DIFFUSION, HANGING DROP, temperature 298K
Crystal Properties Matthews coefficient Solvent content 2.75 55.3
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 86.158 α = 90 b = 94.732 β = 90 c = 155.439 γ = 90
Symmetry Space Group I 2 2 2
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 CCD ADSC QUANTUM 4 mirrors 2009-04-20 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON CHESS BEAMLINE A1 0.9789 CHESS A1
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 1.97 33.2 0.065 43960 43565 1 1
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION SAD THROUGHOUT 1.956 33.18 43564 2327 99.22 0.20111 0.19895 0.1964 0.24295 0.2387 RANDOM 52.429
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] 0.67 -1.81 1.14
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 38.785 r_dihedral_angle_4_deg 19.05 r_dihedral_angle_3_deg 17.416 r_dihedral_angle_1_deg 6.898 r_scangle_it 5.774 r_scbond_it 3.685 r_mcangle_it 2.901 r_angle_refined_deg 2.068 r_mcbond_it 1.672 r_chiral_restr 0.183
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 38.785 r_dihedral_angle_4_deg 19.05 r_dihedral_angle_3_deg 17.416 r_dihedral_angle_1_deg 6.898 r_scangle_it 5.774 r_scbond_it 3.685 r_mcangle_it 2.901 r_angle_refined_deg 2.068 r_mcbond_it 1.672 r_chiral_restr 0.183 r_bond_refined_d 0.027 r_gen_planes_refined 0.011 r_bond_other_d r_angle_other_deg r_gen_planes_other r_nbd_refined r_nbd_other r_nbtor_refined r_nbtor_other r_xyhbond_nbd_refined r_xyhbond_nbd_other r_metal_ion_refined r_metal_ion_other r_symmetry_vdw_refined r_symmetry_vdw_other r_symmetry_hbond_refined r_symmetry_hbond_other r_symmetry_metal_ion_refined r_symmetry_metal_ion_other r_mcbond_other r_rigid_bond_restr r_sphericity_free r_sphericity_bonded
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 3683 Nucleic Acid Atoms Solvent Atoms 168 Heterogen Atoms
Software Software Software Name Purpose ADSC data collection HKL2Map model building REFMAC refinement HKL-2000 data reduction HKL-2000 data scaling HKL2Map phasing