3LW0

IGF-1RK in complex with ligand MSC1609119A-1

X-RAY DIFFRACTION

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Starting Model(s)

Initial Refinement Model(s)
Type	Source	Accession Code	Details
experimental model	PDB	1JQH	PDB ENTRY 1JQH

Crystallization

Crystalization Experiments
ID	Method	pH	Temperature	Details
1				pH 0.0

Crystal Properties
Matthews coefficient	Solvent content
2.92	57.95

Crystal Data

Unit Cell
Length ( Å )	Angle ( ˚ )
a = 189.346	α = 90
b = 189.346	β = 90
c = 115.92	γ = 120

Symmetry
Space Group	H 3

Diffraction

Diffraction Experiment
ID #	Crystal ID	Scattering Type	Data Collection Temperature	Detector	Detector Type	Details	Collection Date	Monochromator	Protocol
1	1	x-ray	100	CCD	MARMOSAIC 225 mm CCD		2007-02-08	M	SINGLE WAVELENGTH

Radiation Source
ID #	Source	Type	Wavelength List	Synchrotron Site	Beamline
1	SYNCHROTRON	SLS BEAMLINE X06DA	1.00000	SLS	X06DA

Data Collection

Overall
ID #	Resolution (High)	Resolution (Low)	Percent Possible (Observed)	R Merge I (Observed)	R Sym I (Observed)	Net I Over Average Sigma (I)	Redundancy	Number Reflections (All)	Number Reflections (Observed)	Observed Criterion Sigma (F)	Observed Criterion Sigma (I)	B (Isotropic) From Wilson Plot
1	1.79	20	99.8	0.116	0.103	11.72	4.8		9614	1

Highest Resolution Shell
ID #	Resolution (High)	Resolution (Low)	Percent Possible (All)	Percent Possible (Observed)	R Merge I (Observed)	R-Sym I (Observed)	Mean I Over Sigma (Observed)	Redundancy	Number Unique Reflections (All)
	1.79	1.87	99.5		0.526	0.468	4.2	4.7	9614

Refinement

Statistics
Diffraction ID	Structure Solution Method	Cross Validation method	Starting model	Resolution (High)	Resolution (Low)	Number Reflections (Observed)	Number Reflections (R-Free)	Percent Reflections (Observed)	R-Work	R-Free	R-Free Selection Details	Mean Isotropic B
X-RAY DIFFRACTION	MOLECULAR REPLACEMENT	THROUGHOUT	PDB ENTRY 1JQH	1.79	20	9614	4956		0.157	0.185	RANDOM	12.868

Temperature Factor Modeling
Anisotropic B[1][1]	Anisotropic B[1][2]	Anisotropic B[1][3]	Anisotropic B[2][2]	Anisotropic B[2][3]	Anisotropic B[3][3]
-0.11	-0.05		-0.11		0.16

RMS Deviations
Key	Refinement Restraint Deviation
r_dihedral_angle_2_deg	35.258
r_dihedral_angle_4_deg	14.579
r_dihedral_angle_3_deg	12.439
r_dihedral_angle_1_deg	5.704
r_scangle_it	4.482
r_scbond_it	3.151
r_mcangle_it	1.909
r_mcbond_it	1.77
r_angle_refined_deg	1.23
r_angle_other_deg	1.205
r_mcbond_other	0.24
r_nbd_refined	0.205
r_symmetry_vdw_other	0.199
r_nbd_other	0.186
r_nbtor_refined	0.174
r_xyhbond_nbd_refined	0.135
r_symmetry_hbond_refined	0.121
r_chiral_restr	0.079
r_symmetry_vdw_refined	0.075
r_nbtor_other	0.071
r_xyhbond_nbd_other	0.047
r_bond_refined_d	0.011
r_gen_planes_refined	0.005
r_gen_planes_other	0.002
r_bond_other_d	0.001

Non-Hydrogen Atoms Used in Refinement
Non-Hydrogen Atoms	Number
Protein Atoms	9368
Nucleic Acid Atoms
Solvent Atoms	1049
Heterogen Atoms	292

Software

Software
Software Name	Purpose
REFMAC	refinement
XDS	data reduction
XSCALE	data scaling