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hPRP8 Non-Native Subdomain
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 vapour diffusion 6 298 12% PEG4000, Tris Ph8, 1,3 diamino-propane, pH 6, vapour diffusion, temperature 298K
Crystal Properties Matthews coefficient Solvent content 2.46 50.03
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 44.732 α = 90 b = 42.176 β = 102 c = 98.381 γ = 90
Symmetry Space Group P 1 21 1
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 CCD 2006-06-27 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON ALS BEAMLINE 8.3.1 1.11586 ALS 8.3.1
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 1.85 100 99.9 0.063 11.9 7.3 30833
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R Merge I (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 1.85 1.92 99.8 0.529 7 3060
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION SAD THROUGHOUT 1.85 29.47 30823 1551 99.56 0.212 0.21 0.2096 0.254 0.2517 RANDOM 29.79
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] 1.28 0.12 0.49 -1.72
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 40.4 r_dihedral_angle_3_deg 16.683 r_dihedral_angle_4_deg 15.991 r_dihedral_angle_1_deg 5.668 r_scangle_it 3.73 r_scbond_it 2.398 r_mcangle_it 1.828 r_angle_refined_deg 1.443 r_mcbond_it 1.061 r_nbtor_refined 0.306
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 40.4 r_dihedral_angle_3_deg 16.683 r_dihedral_angle_4_deg 15.991 r_dihedral_angle_1_deg 5.668 r_scangle_it 3.73 r_scbond_it 2.398 r_mcangle_it 1.828 r_angle_refined_deg 1.443 r_mcbond_it 1.061 r_nbtor_refined 0.306 r_nbd_refined 0.215 r_symmetry_vdw_refined 0.206 r_xyhbond_nbd_refined 0.148 r_symmetry_hbond_refined 0.14 r_chiral_restr 0.086 r_bond_refined_d 0.014 r_gen_planes_refined 0.006
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 2441 Nucleic Acid Atoms Solvent Atoms 267 Heterogen Atoms
Software Software Software Name Purpose DENZO data reduction SCALEPACK data scaling SOLVE phasing RESOLVE phasing REFMAC refinement PDB_EXTRACT data extraction HKL-2000 data reduction HKL-2000 data scaling