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Crystal structure of human REDD1, a hypoxia-induced regulator of mTOR
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION, HANGING DROP 277 0.1 M NaF, 20-26% PEG3350, 0.05 mM C12E9, vapor diffusion, hanging drop, temperature 277K
Crystal Properties Matthews coefficient Solvent content 1.92 35.99
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 33.331 α = 77.56 b = 36.586 β = 89.08 c = 47.97 γ = 86.18
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 CCD CUSTOM-MADE 2008-01-01 M SINGLE WAVELENGTH 2 1 x-ray 100 CCD CUSTOM-MADE 2008-01-01 M SAD
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON APS BEAMLINE 19-BM 0.97926 APS 19-BM 2 SYNCHROTRON APS BEAMLINE 19-BM 1.28288 APS 19-BM
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1,2 2 50 95.9 0.068 15.9 4 14319
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R Merge I (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1,2 2 2.07 92.5 0.259 3.4 1392
Refinement Statistics Diffraction ID Structure Solution Method Resolution (High) Resolution (Low) Cut-off Sigma (F) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) Mean Isotropic B X-RAY DIFFRACTION SAD 2 27.096 1 13975 708 93.58 0.179 0.177 0.1713 0.214 0.2125 30.4
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] -3.806 1.177 1.635 6.712 -1.821 -2.906
RMS Deviations Key Refinement Restraint Deviation f_dihedral_angle_d 15.69 f_angle_d 0.77 f_chiral_restr 0.051 f_bond_d 0.003 f_plane_restr 0.002
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 1921 Nucleic Acid Atoms Solvent Atoms 203 Heterogen Atoms
Software Software Software Name Purpose DENZO data reduction SCALEPACK data scaling PHENIX refinement PDB_EXTRACT data extraction ADSC data collection PHENIX phasing