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Crystal structure of Anopheles gambiae adenosine kinase in complex with P1,P4-di(adenosine-5) tetraphosphate
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION, SITTING DROP 5.5 291 25% PEG3350, 0.2 M MgCl2, 5% 2-propanol, 25% glycerol and 0.1 M BisTris, pH 5.5, VAPOR DIFFUSION, SITTING DROP, temperature 291K
Crystal Properties Matthews coefficient Solvent content 2.24 45.05
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 50.381 α = 90 b = 76.813 β = 92.12 c = 140.515 γ = 90
Symmetry Space Group P 1 21 1
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 CCD ADSC QUANTUM 315r 2008-10-02 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON NSLS BEAMLINE X29A 0.9791 NSLS X29A
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 2 20 100 72380 72642 19.5
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 2 2.07 99.8
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION MOLECULAR REPLACEMENT THROUGHOUT 2 20 72642 3667 99.6 0.201 0.198 0.1996 0.248 0.2462 RANDOM 39.99
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] 1.84 -3.04 -1.1 -0.97
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 37.781 r_dihedral_angle_4_deg 19.256 r_dihedral_angle_3_deg 16.77 r_dihedral_angle_1_deg 5.676 r_scangle_it 3.687 r_scbond_it 2.28 r_mcangle_it 1.629 r_angle_refined_deg 1.496 r_mcbond_it 0.891 r_chiral_restr 0.106
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 37.781 r_dihedral_angle_4_deg 19.256 r_dihedral_angle_3_deg 16.77 r_dihedral_angle_1_deg 5.676 r_scangle_it 3.687 r_scbond_it 2.28 r_mcangle_it 1.629 r_angle_refined_deg 1.496 r_mcbond_it 0.891 r_chiral_restr 0.106 r_bond_refined_d 0.014 r_gen_planes_refined 0.006
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 7748 Nucleic Acid Atoms Solvent Atoms 242 Heterogen Atoms 165
Software Software Software Name Purpose REFMAC refinement PDB_EXTRACT data extraction CBASS data collection HKL-2000 data reduction HKL-2000 data scaling MOLREP phasing