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Structure of human anti HIV 21c Fab
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION, SITTING DROP 7.5 289 70% 2-methyl-2,4-pentanediol, 0.1 M Hepes pH 7.5, VAPOR DIFFUSION, SITTING DROP, temperature 289K
Crystal Properties Matthews coefficient Solvent content 3.23 61.87
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 98.103 α = 90 b = 98.103 β = 90 c = 220.324 γ = 120
Symmetry Space Group P 65 2 2
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 CCD MARMOSAIC 325 mm CCD 2008-06-10 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON SSRL BEAMLINE BL12-2 0.9762 SSRL BL12-2
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 2.2 40.8 99.7 32564 32467 2 2
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION MOLECULAR REPLACEMENT THROUGHOUT 2.2 40.8 30814 1648 99.57 0.19397 0.19262 0.2085 0.21858 0.2331 RANDOM 16.919
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] -0.87 -0.43 -0.87 1.3
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 37.074 r_dihedral_angle_4_deg 17.064 r_dihedral_angle_3_deg 15.7 r_dihedral_angle_1_deg 8.936 r_scangle_it 5.112 r_scbond_it 3.412 r_mcangle_it 2.207 r_angle_refined_deg 1.557 r_mcbond_it 1.226 r_angle_other_deg 0.916
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 37.074 r_dihedral_angle_4_deg 17.064 r_dihedral_angle_3_deg 15.7 r_dihedral_angle_1_deg 8.936 r_scangle_it 5.112 r_scbond_it 3.412 r_mcangle_it 2.207 r_angle_refined_deg 1.557 r_mcbond_it 1.226 r_angle_other_deg 0.916 r_mcbond_other 0.345 r_chiral_restr 0.122 r_bond_refined_d 0.017 r_gen_planes_refined 0.011 r_bond_other_d 0.001 r_gen_planes_other 0.001 r_nbd_refined r_nbd_other r_nbtor_refined r_nbtor_other r_xyhbond_nbd_refined r_xyhbond_nbd_other r_metal_ion_refined r_metal_ion_other r_symmetry_vdw_refined r_symmetry_vdw_other r_symmetry_hbond_refined r_symmetry_hbond_other r_symmetry_metal_ion_refined r_symmetry_metal_ion_other r_rigid_bond_restr r_sphericity_free r_sphericity_bonded
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 3262 Nucleic Acid Atoms Solvent Atoms 181 Heterogen Atoms 16
Software Software Software Name Purpose REFMAC refinement PDB_EXTRACT data extraction HKL-2000 data collection HKL-2000 data reduction HKL-2000 data scaling PHASER phasing