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Crystal structure of the stage V sporulation protein AD (SpoVAD) from Bacillus licheniformis. Northeast Structural Genomics Consortium Target BiR6.
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 icrobatch crystallization under paraffin oil 7.5 291 40% PEG 1000, 0.1M ammonium phosphate, 0.1M HEPES, pH 7.5, icrobatch crystallization under paraffin oil, temperature 291K
Crystal Properties Matthews coefficient Solvent content 1.82 32.47
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 64.957 α = 90 b = 83.059 β = 101.01 c = 103.662 γ = 90
Symmetry Space Group P 1 21 1
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 CCD MAR CCD 165 mm 2010-01-25 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON NSLS BEAMLINE X4C 0.97916 NSLS X4C
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 1.993 50 97.4 0.075 20.1 3.4 145826 142035
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R Merge I (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 2 2.07 84.2 0.201 4.53 2.7 14586
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Resolution (High) Resolution (Low) Cut-off Sigma (F) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION SAD THROUGHOUT 1.993 38.939 1.34 73163 3683 98.95 0.1703 0.1681 0.1653 0.2109 0.2087 RANDOM
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3]
RMS Deviations Key Refinement Restraint Deviation f_dihedral_angle_d 17.565 f_angle_d 1.378 f_chiral_restr 0.1 f_bond_d 0.008 f_plane_restr 0.005
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 9375 Nucleic Acid Atoms Solvent Atoms 587 Heterogen Atoms
Software Software Software Name Purpose PHENIX refinement SHELXDE phasing SOLVE phasing CNS refinement HKL-2000 data collection DENZO data reduction SCALEPACK data scaling