X-RAY DIFFRACTION

Starting Model(s)

Initial Refinement Model(s)
TypeSourceAccession CodeDetails
experimental modelPDB 2RIOPDB ENTRY 2RIO

Crystallization

Crystalization Experiments
IDMethodpHTemperatureDetails
1hanging drop298hanging drop, temperature 298K
Crystal Properties
Matthews coefficientSolvent content
469.27

Crystal Data

Unit Cell
Length ( Å )Angle ( ˚ )
a = 126.18α = 90
b = 126.18β = 90
c = 175.16γ = 120
Symmetry
Space GroupP 32 1 2

Diffraction

Diffraction Experiment
ID #Crystal IDScattering TypeData Collection TemperatureDetectorDetector TypeDetailsCollection DateMonochromatorProtocol
11x-rayCCDADSC QUANTUM 315MSINGLE WAVELENGTH
Radiation Source
ID #SourceTypeWavelength ListSynchrotron SiteBeamline
1SYNCHROTRONAPS BEAMLINE 24-ID-C0.979APS24-ID-C

Data Collection

Overall
ID #Resolution (High)Resolution (Low)Percent Possible (Observed)R Sym I (Observed)Net I Over Average Sigma (I)RedundancyNumber Reflections (All)Number Reflections (Observed)Observed Criterion Sigma (F)Observed Criterion Sigma (I)B (Isotropic) From Wilson Plot
13.3351.594.90.1242.72236922369

Refinement

Statistics
Diffraction IDStructure Solution MethodCross Validation methodStarting modelResolution (High)Resolution (Low)Number Reflections (Observed)Number Reflections (R-Free)Percent Reflections (Observed)R-Factor (Observed)R-WorkR-FreeR-Free Selection DetailsMean Isotropic B
X-RAY DIFFRACTIONMOLECULAR REPLACEMENTTHROUGHOUTPDB ENTRY 2RIO3.3351.522335115194.640.2560.2540.293RANDOM40.115
Temperature Factor Modeling
Anisotropic B[1][1]Anisotropic B[1][2]Anisotropic B[1][3]Anisotropic B[2][2]Anisotropic B[2][3]Anisotropic B[3][3]
1.920.961.92-2.88
RMS Deviations
KeyRefinement Restraint Deviation
r_dihedral_angle_2_deg40.643
r_dihedral_angle_4_deg25.548
r_dihedral_angle_3_deg23.41
r_dihedral_angle_1_deg7.187
r_angle_refined_deg1.749
r_angle_other_deg1.316
r_scangle_it0.6
r_scbond_it0.451
r_mcangle_it0.246
r_mcbond_it0.15
RMS Deviations
KeyRefinement Restraint Deviation
r_dihedral_angle_2_deg40.643
r_dihedral_angle_4_deg25.548
r_dihedral_angle_3_deg23.41
r_dihedral_angle_1_deg7.187
r_angle_refined_deg1.749
r_angle_other_deg1.316
r_scangle_it0.6
r_scbond_it0.451
r_mcangle_it0.246
r_mcbond_it0.15
r_mcbond_other0.107
r_chiral_restr0.091
r_bond_refined_d0.016
r_gen_planes_refined0.009
r_bond_other_d0.003
r_gen_planes_other0.003
Non-Hydrogen Atoms Used in Refinement
Non-Hydrogen AtomsNumber
Protein Atoms6298
Nucleic Acid Atoms
Solvent Atoms
Heterogen Atoms46

Software

Software
Software NamePurpose
SCALAdata scaling
REFMACrefinement
PDB_EXTRACTdata extraction
MOSFLMdata reduction
PHASERphasing