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Urate oxidase complexed with 8-thio xanthine
Starting Model(s) Initial Refinement Model(s) Type Source Accession Code Details experimental model PDB 3L8W
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 8 291 0.05M TRIS BUFFER, PH 8, 10 % PEG 8000, temperature 291K
Crystal Properties Matthews coefficient Solvent content 2.97 58.52
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 79.637 α = 90 b = 95.471 β = 90 c = 104.61 γ = 90
Symmetry Space Group I 2 2 2
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 CCD MARRESEARCH SI(111) 2007-05-03 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON ESRF BEAMLINE BM14 0.948 ESRF BM14
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) R Sym I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 1.5 39.8 94.5 0.041 0.039 29.4 4.2 62477 60541 2 4 15.1
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R Merge I (Observed) R-Sym I (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 1.5 1.65 96 0.88 0.87 5.1 3.8 15239
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Starting model Resolution (High) Resolution (Low) Cut-off Sigma (I) Cut-off Sigma (F) Number Reflections (All) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (All) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION FOURIER SYNTHESIS THROUGHOUT 3L8W 1.5 10 4 2 62332 60541 3233 97.7 0.2079 0.202 0.201 0.1877 0.241 RANDOM
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3]
Coordinate Error Structure Solution Method Refinement High Resolution Refinement Low Resolution 8 2724
RMS Deviations Key Refinement Restraint Deviation s_angle_d 0.08 s_non_zero_chiral_vol 0.063 s_zero_chiral_vol 0.052 s_similar_adp_cmpnt 0.049 s_bond_d 0.035 s_from_restr_planes 0.0301 s_anti_bump_dis_restr 0.021 s_similar_dist s_rigid_bond_adp_cmpnt s_approx_iso_adps
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 2363 Nucleic Acid Atoms Solvent Atoms 316 Heterogen Atoms 49
Software Software Software Name Purpose MxCuBE data collection SHELX model building SHELXL-97 refinement MOSFLM data reduction SCALA data scaling SHELX phasing