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Urate oxidase from aspergillus flavus complexed with xanthin
Starting Model(s) Initial Refinement Model(s) Type Source Accession Code Details experimental model PDB 1R51
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 Batch 8 291 Tris buffer 0.05M, 8% PEG 8000, pH 8.0, Batch, temperature 291K
Crystal Properties Matthews coefficient Solvent content 2.94 58.14
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 79.527 α = 90 b = 94.98 β = 90 c = 104.323 γ = 90
Symmetry Space Group I 2 2 2
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 CCD ADSC QUANTUM 315r CURVATED MIRRORS 2008-10-20 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON ESRF BEAMLINE BM30A 0.964 ESRF BM30A
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) R Sym I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 1 29.4 95.1 0.053 0.051 18.3 5.4 202725 153725 2 4 10.6
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R Merge I (Observed) R-Sym I (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 1 1.16 99 0.201 0.199 3.7 3.7 25556
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Starting model Resolution (High) Resolution (Low) Number Reflections (All) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (All) R-Factor (Observed) R-Work (Depositor) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION FOURIER SYNTHESIS THROUGHOUT 1R51 1 25 202546 153725 9177 95.1 0.136 0.124 0.121 0.144 0.1289 RANDOM
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3]
Coordinate Error Structure Solution Method Refinement High Resolution Refinement Low Resolution 20 2290 2841
RMS Deviations Key Refinement Restraint Deviation s_non_zero_chiral_vol 0.092 s_approx_iso_adps 0.084 s_bond_d 0.083 s_anti_bump_dis_restr 0.083 s_zero_chiral_vol 0.075 s_similar_adp_cmpnt 0.043 s_from_restr_planes 0.0311 s_angle_d 0.03 s_rigid_bond_adp_cmpnt 0.004 s_similar_dist
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 2363 Nucleic Acid Atoms Solvent Atoms 450 Heterogen Atoms 26
Software Software Software Name Purpose ADSC data collection SHELX model building SHELX refinement MOSFLM data reduction SCALA data scaling SHELX phasing