☰ Navigation Tabs
Crystal structure of the C-terminal region of Human p97
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION, HANGING DROP 7.5 289 2.1M (NH4)2SO4, 0.1M MES pH 6.0, 2% PEG MME 550, VAPOR DIFFUSION, HANGING DROP, temperature 289K
Crystal Properties Matthews coefficient Solvent content 2.14 42.46
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 31.084 α = 90 b = 102.27 β = 90 c = 112.973 γ = 90
Symmetry Space Group P 21 21 21
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 CCD MAR CCD 130 mm 2007-08-02 M SINGLE WAVELENGTH 2 1 x-ray IMAGE PLATE RIGAKU RAXIS IV 2007-10-12 M MAD
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON BSRF BEAMLINE 3W1A 1.54180 BSRF 3W1A 2 ROTATING ANODE RIGAKU 0.9000, 0.9792
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1,2 2 50 99.9 0.078 13.5 5.3 28463
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 2 2.08
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION MAD THROUGHOUT 2 49.45 25172 1296 99.62 0.203 0.2 0.2042 0.25 0.2003 RANDOM 27.407
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] 1.23 -0.59 -0.63
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 41.618 r_dihedral_angle_4_deg 15.008 r_dihedral_angle_3_deg 13.958 r_dihedral_angle_1_deg 7.941 r_scangle_it 2.668 r_scbond_it 1.665 r_angle_refined_deg 1.196 r_mcangle_it 1.088 r_mcbond_it 0.649 r_nbtor_refined 0.3
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 41.618 r_dihedral_angle_4_deg 15.008 r_dihedral_angle_3_deg 13.958 r_dihedral_angle_1_deg 7.941 r_scangle_it 2.668 r_scbond_it 1.665 r_angle_refined_deg 1.196 r_mcangle_it 1.088 r_mcbond_it 0.649 r_nbtor_refined 0.3 r_symmetry_vdw_refined 0.205 r_nbd_refined 0.196 r_symmetry_hbond_refined 0.191 r_xyhbond_nbd_refined 0.137 r_chiral_restr 0.085 r_bond_refined_d 0.01 r_gen_planes_refined 0.004
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 2836 Nucleic Acid Atoms Solvent Atoms 169 Heterogen Atoms 67
Software Software Software Name Purpose DENZO data reduction SCALEPACK data scaling SOLVE phasing RESOLVE phasing REFMAC refinement PDB_EXTRACT data extraction MAR345dtb data collection