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Crystal structure of Reston Ebola VP35 interferon inhibitory domain
Starting Model(s) Initial Refinement Model(s) Type Source Accession Code Details experimental model PDB 3FKE PDB ENTRY 3FKE
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION, HANGING DROP 3 293 16% PEG3350, 0.1M SODIUM ACETATE, 14% TACSIMATE, pH 3.0, VAPOR DIFFUSION, HANGING DROP, temperature 293K
Crystal Properties Matthews coefficient Solvent content 2.36 47.78
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 51.551 α = 90 b = 51.551 β = 90 c = 50.865 γ = 90
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 CCD ADSC QUANTUM 315r 2009-11-22 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON APS BEAMLINE 19-ID 0.979 APS 19-ID
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 1.71 50 99.8 0.7 39 7.4 13734 -5
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R Merge I (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 1.71 1.74 100 0.603 2.9 7.3
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Starting model Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (All) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION MOLECULAR REPLACEMENT THROUGHOUT PDB ENTRY 3FKE 1.71 22.99 13734 729 99.85 0.17257 0.17257 0.17 0.177 0.22528 0.2261 RANDOM 20.753
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] -0.01 -0.01 0.02
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 30.879 r_dihedral_angle_4_deg 17.986 r_dihedral_angle_3_deg 14.042 r_dihedral_angle_1_deg 5.424 r_scangle_it 3.378 r_scbond_it 2.149 r_mcangle_it 1.416 r_angle_refined_deg 1.313 r_mcbond_it 0.861 r_nbtor_refined 0.312
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 30.879 r_dihedral_angle_4_deg 17.986 r_dihedral_angle_3_deg 14.042 r_dihedral_angle_1_deg 5.424 r_scangle_it 3.378 r_scbond_it 2.149 r_mcangle_it 1.416 r_angle_refined_deg 1.313 r_mcbond_it 0.861 r_nbtor_refined 0.312 r_nbd_refined 0.202 r_symmetry_vdw_refined 0.196 r_xyhbond_nbd_refined 0.155 r_symmetry_hbond_refined 0.094 r_chiral_restr 0.09 r_bond_refined_d 0.014 r_gen_planes_refined 0.006
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 984 Nucleic Acid Atoms Solvent Atoms 93 Heterogen Atoms 14
Software Software Software Name Purpose HKL-3000 data collection PHASER phasing REFMAC refinement HKL-3000 data reduction SCALEPACK data scaling