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Crystal structure of the mthk rck in complex with cadmium
Starting Model(s) Initial Refinement Model(s) Type Source Accession Code Details experimental model PDB 2AEJ
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION, HANGING DROP 4.7 318 1M NH4-FORMATE, 10% PEG 4000, 0.1M NA ACETATE, PH 4.7, VAPOR DIFFUSION, HANGING DROP, TEMPERATURE 318K
Crystal Properties Matthews coefficient Solvent content 2.15 42.85
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 58.022 α = 90 b = 38.293 β = 95.1 c = 96.634 γ = 90
Symmetry Space Group P 1 21 1
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 CCD ADSC QUANTUM 315 FLAT MIRROR, RH COATED 2008-03-05 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON SSRL BEAMLINE BL9-1 SSRL BL9-1
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 2.2 57.83 99.4 0.039 10.8 3.7 21805
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Starting model Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION FOURIER SYNTHESIS THROUGHOUT 2AEJ 2.2 57.83 20697 1108 99.31 0.1878 0.1844 0.2537 0.25364 0.31 RANDOM 51.557
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] -1.1 -1.02 0.41 0.51
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 35.503 r_dihedral_angle_3_deg 17.503 r_dihedral_angle_4_deg 15.556 r_dihedral_angle_1_deg 5.619 r_scangle_it 4.715 r_scbond_it 2.88 r_angle_refined_deg 1.877 r_mcangle_it 1.696 r_mcbond_it 0.962 r_mcbond_other 0.335
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 35.503 r_dihedral_angle_3_deg 17.503 r_dihedral_angle_4_deg 15.556 r_dihedral_angle_1_deg 5.619 r_scangle_it 4.715 r_scbond_it 2.88 r_angle_refined_deg 1.877 r_mcangle_it 1.696 r_mcbond_it 0.962 r_mcbond_other 0.335 r_symmetry_hbond_refined 0.319 r_symmetry_vdw_other 0.313 r_metal_ion_refined 0.295 r_symmetry_vdw_refined 0.239 r_nbd_refined 0.235 r_nbd_other 0.21 r_xyhbond_nbd_refined 0.201 r_nbtor_refined 0.181 r_chiral_restr 0.14 r_nbtor_other 0.095 r_bond_refined_d 0.021 r_gen_planes_refined 0.009 r_gen_planes_other 0.001 r_bond_other_d r_angle_other_deg r_xyhbond_nbd_other r_metal_ion_other r_symmetry_hbond_other r_symmetry_metal_ion_refined r_symmetry_metal_ion_other r_rigid_bond_restr r_sphericity_free r_sphericity_bonded
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 3378 Nucleic Acid Atoms Solvent Atoms 112 Heterogen Atoms 4
Software Software Software Name Purpose REFMAC refinement MOSFLM data reduction SCALA data scaling REFMAC phasing