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X-ray structure of NS1 effector domain W187A mutant
Starting Model(s) Initial Refinement Model(s) Type Source Accession Code Details experimental model PDB 3EE9 PDB ENTRY 3EE9
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 EVAPORATION 5.5 277 0.3M magnesium formate, 0.1M Bis-Tris , pH 5.5, EVAPORATION, temperature 277K
Crystal Properties Matthews coefficient Solvent content 2.8 56.02
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 47.784 α = 90 b = 48.193 β = 90 c = 154.687 γ = 90
Symmetry Space Group P 21 21 21
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 IMAGE PLATE MAR scanner 345 mm plate Varimax 2008-07-25 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 ROTATING ANODE RIGAKU MICROMAX-007 HF 1.5418
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) R Sym I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 2.21 30 0.061 0.042 79 13.4 18544 17384
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R Merge I (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 2.21 2.29 92.8 0.098 23.9 12 1710
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Starting model Resolution (High) Resolution (Low) Number Reflections (All) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (All) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION MOLECULAR REPLACEMENT THROUGHOUT PDB ENTRY 3EE9 2.21 28.35 18544 17384 941 98.89 0.18944 0.18944 0.18703 0.184 0.23304 0.2293 RANDOM 29.443
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] 0.6 0.68 -1.28
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 31.97 r_dihedral_angle_4_deg 14.948 r_dihedral_angle_3_deg 13.803 r_dihedral_angle_1_deg 6.109 r_scangle_it 6.055 r_scbond_it 4.035 r_mcangle_it 2.555 r_mcbond_it 1.568 r_angle_refined_deg 1.138 r_nbtor_refined 0.297
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 31.97 r_dihedral_angle_4_deg 14.948 r_dihedral_angle_3_deg 13.803 r_dihedral_angle_1_deg 6.109 r_scangle_it 6.055 r_scbond_it 4.035 r_mcangle_it 2.555 r_mcbond_it 1.568 r_angle_refined_deg 1.138 r_nbtor_refined 0.297 r_nbd_refined 0.188 r_symmetry_vdw_refined 0.184 r_symmetry_hbond_refined 0.14 r_xyhbond_nbd_refined 0.137 r_chiral_restr 0.076 r_bond_refined_d 0.01 r_gen_planes_refined 0.003
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 1996 Nucleic Acid Atoms Solvent Atoms 230 Heterogen Atoms
Software Software Software Name Purpose MAR345dtb data collection AMoRE phasing REFMAC refinement HKL-2000 data reduction HKL-2000 data scaling