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Inactive truncation of the beta-carboxysomal gamma-Carbonic Anhydrase, CcmM, form 2
Starting Model(s) Initial Refinement Model(s) Type Source Accession Code Details experimental model PDB 3KWD PDB entry 3KWD
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION, SITTING DROP 4.6 293 0.01M cobalt (II) chloride, 0.1M sodium acetate, 1.0 M 1,6-hexanediol, pH 4.6, VAPOR DIFFUSION, SITTING DROP, temperature 293K
Crystal Properties Matthews coefficient Solvent content 1.98 37.98
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 102.931 α = 90 b = 102.931 β = 90 c = 44.903 γ = 120
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 CCD ADSC QUANTUM 315 2007-03-18 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON APS BEAMLINE 19-ID 0.91840 APS 19-ID
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 1.1 40 91.4 0.066 9.7 5.7 65832 -3 -3 9.4
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R Merge I (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 1.1 1.12 64.2 0.294 4.1 2.2 2304
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Starting model Resolution (High) Resolution (Low) Cut-off Sigma (I) Cut-off Sigma (F) Number Reflections (All) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (All) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION MOLECULAR REPLACEMENT THROUGHOUT PDB entry 3KWD 1.1 26.95 -999 -999 62300 62300 3296 91.09 0.12994 0.12944 0.1289 0.1378 0.13947 0.1475 RANDOM 11.452
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] -0.07 -0.04 -0.07 0.11
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 32.729 r_dihedral_angle_4_deg 13.336 r_dihedral_angle_3_deg 11.705 r_dihedral_angle_1_deg 6.583 r_scangle_it 1.615 r_angle_refined_deg 1.411 r_scbond_it 1.154 r_angle_other_deg 0.866 r_mcangle_it 0.682 r_mcbond_it 0.568
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 32.729 r_dihedral_angle_4_deg 13.336 r_dihedral_angle_3_deg 11.705 r_dihedral_angle_1_deg 6.583 r_scangle_it 1.615 r_angle_refined_deg 1.411 r_scbond_it 1.154 r_angle_other_deg 0.866 r_mcangle_it 0.682 r_mcbond_it 0.568 r_symmetry_vdw_other 0.306 r_nbd_refined 0.208 r_nbd_other 0.196 r_symmetry_vdw_refined 0.193 r_nbtor_refined 0.174 r_mcbond_other 0.126 r_symmetry_hbond_refined 0.107 r_xyhbond_nbd_refined 0.103 r_chiral_restr 0.084 r_nbtor_other 0.08 r_bond_refined_d 0.008 r_gen_planes_refined 0.005 r_bond_other_d 0.002 r_gen_planes_other 0.001 r_xyhbond_nbd_other r_metal_ion_refined r_metal_ion_other r_symmetry_hbond_other r_symmetry_metal_ion_refined r_symmetry_metal_ion_other r_rigid_bond_restr r_sphericity_free r_sphericity_bonded
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 1266 Nucleic Acid Atoms Solvent Atoms 193 Heterogen Atoms 12
Software Software Software Name Purpose ADSC data collection MOLREP phasing REFMAC refinement HKL-3000 data reduction HKL-3000 data scaling