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Structure of the N-terminal BRCT domain of human microcephalin (MCPH1).
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 7 295 0.2M sodium succinate, 15% PEG 3350, pH 7.0, VAPOR DIFFUSION, HANGING DROP, temperature 295K
Crystal Properties Matthews coefficient Solvent content 2.1 41.47
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 35.069 α = 90 b = 39.274 β = 91.52 c = 106.639 γ = 90
Symmetry Space Group P 1 21 1
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 CCD ADSC QUANTUM 315 2008-10-10 M SAD
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON NSLS BEAMLINE X29A NSLS X29A
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 1.6 30 88.9 0.059 46.07 6.4 36909 2
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R Merge I (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1.55 1.62 64.1 0.397 2.95 4
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION SAD THROUGHOUT 1.6 30 36909 624 100 0.139 0.138 0.1989 0.195 0.2353 RANDOM 23.09
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] 0.76 -0.32 -1.42 0.64
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 35.295 r_dihedral_angle_4_deg 19.494 r_sphericity_free 16.078 r_dihedral_angle_3_deg 15.175 r_sphericity_bonded 12.012 r_scangle_it 6.773 r_dihedral_angle_1_deg 6.13 r_scbond_it 5.028 r_mcangle_it 3.581 r_rigid_bond_restr 2.982
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 35.295 r_dihedral_angle_4_deg 19.494 r_sphericity_free 16.078 r_dihedral_angle_3_deg 15.175 r_sphericity_bonded 12.012 r_scangle_it 6.773 r_dihedral_angle_1_deg 6.13 r_scbond_it 5.028 r_mcangle_it 3.581 r_rigid_bond_restr 2.982 r_mcbond_it 2.56 r_angle_refined_deg 2.046 r_chiral_restr 0.161 r_bond_refined_d 0.026 r_gen_planes_refined 0.012 r_bond_other_d r_angle_other_deg r_gen_planes_other r_nbd_refined r_nbd_other r_nbtor_refined r_nbtor_other r_xyhbond_nbd_refined r_xyhbond_nbd_other r_metal_ion_refined r_metal_ion_other r_symmetry_vdw_refined r_symmetry_vdw_other r_symmetry_hbond_refined r_symmetry_hbond_other r_symmetry_metal_ion_refined r_symmetry_metal_ion_other r_mcbond_other
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 2286 Nucleic Acid Atoms Solvent Atoms 302 Heterogen Atoms 1
Software Software Software Name Purpose HKL-2000 data collection SHELXS phasing REFMAC refinement HKL-2000 data reduction HKL-2000 data scaling HKL2Map phasing