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Hypothetical protein from Leishmania major
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION 9.2 293 protein buffer 25 mM HEPES pH 7.25, 125 mM NaCl; crystallization buffer 0.1 M TRIX/Glycine pH 9.2, 0.2 M MgCl2, 28% PEG 4000, vapor diffusion, temperature 293K
Crystal Properties Matthews coefficient Solvent content 2.09 41.17
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 52.628 α = 90 b = 67.764 β = 90 c = 76.182 γ = 90
Symmetry Space Group C 2 2 21
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 CCD ADSC QUANTUM 315 2003-07-08 SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON ALS BEAMLINE 8.2.2 0.9784 ALS 8.2.2
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 1.9 40 79.5 0.067 13.4 6.5 8847
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R Merge I (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 1.9 1.97 53.8 0.229 5.8 586
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION MOLECULAR REPLACEMENT THROUGHOUT 1.9 40 8787 414 79.33 0.2 0.198 0.209 0.226 0.2361 RANDOM 23.938
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] -44.61 102.01 -57.4
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 42.312 r_dihedral_angle_3_deg 14.024 r_dihedral_angle_4_deg 8.983 r_dihedral_angle_1_deg 6.131 r_scangle_it 3.064 r_scbond_it 1.869 r_angle_refined_deg 1.311 r_mcangle_it 1.155 r_angle_other_deg 0.877 r_mcbond_it 0.598
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 42.312 r_dihedral_angle_3_deg 14.024 r_dihedral_angle_4_deg 8.983 r_dihedral_angle_1_deg 6.131 r_scangle_it 3.064 r_scbond_it 1.869 r_angle_refined_deg 1.311 r_mcangle_it 1.155 r_angle_other_deg 0.877 r_mcbond_it 0.598 r_mcbond_other 0.126 r_chiral_restr 0.078 r_bond_refined_d 0.012 r_gen_planes_refined 0.005 r_bond_other_d 0.001 r_gen_planes_other 0.001
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 1049 Nucleic Acid Atoms Solvent Atoms 24 Heterogen Atoms 1
Software Software Software Name Purpose DENZO data reduction SCALEPACK data scaling REFMAC refinement PDB_EXTRACT data extraction HKL-2000 data reduction BALBES phasing