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Human GRK2 in complex with Gbetgamma subunits and balanol (co-crystal)
Starting Model(s) Initial Refinement Model(s) Type Source Accession Code Details experimental model PDB 3CIK PDB ENTRY 3CIK
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 277 Well contained 100 mM MES, pH 6.0, 200 mM NaCl, 9% PEG 3350. Drops were 1 uL protein, 1 uL well, VAPOR DIFFUSION, HANGING DROP, temperature 277K
Crystal Properties Matthews coefficient Solvent content 3 58.96
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 185.076 α = 90 b = 73.29 β = 114.51 c = 121.78 γ = 90
Symmetry Space Group C 1 2 1
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 150 IMAGE PLATE MAR scanner 300 mm plate BERYLLIUM MIRRORS 2008-11-08 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON APS BEAMLINE 21-ID-G APS 21-ID-G
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Sym I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 3.1 25 99.2 0.075 15.4 3.1 26894 -1 77
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R-Sym I (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 3.1 3.2 98.8 0.694 1.2 2.7
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Starting model Resolution (High) Resolution (Low) Number Reflections (All) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION MOLECULAR REPLACEMENT THROUGHOUT PDB ENTRY 3CIK 3.1 25 26855 25513 1342 99 0.232 0.23 0.2458 0.27 0.2715 RANDOM 130.16
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] -3.98 -1.63 7.56 -4.94
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 32.936 r_dihedral_angle_3_deg 14.032 r_dihedral_angle_4_deg 12.113 r_dihedral_angle_1_deg 5.489 r_angle_refined_deg 0.912 r_angle_other_deg 0.745 r_scangle_it 0.677 r_scbond_it 0.387 r_mcangle_it 0.383 r_mcbond_it 0.201
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 32.936 r_dihedral_angle_3_deg 14.032 r_dihedral_angle_4_deg 12.113 r_dihedral_angle_1_deg 5.489 r_angle_refined_deg 0.912 r_angle_other_deg 0.745 r_scangle_it 0.677 r_scbond_it 0.387 r_mcangle_it 0.383 r_mcbond_it 0.201 r_chiral_restr 0.051 r_mcbond_other 0.019 r_bond_refined_d 0.006 r_gen_planes_refined 0.003 r_bond_other_d 0.001 r_gen_planes_other 0.001 r_nbd_refined r_nbd_other r_nbtor_refined r_nbtor_other r_xyhbond_nbd_refined r_xyhbond_nbd_other r_metal_ion_refined r_metal_ion_other r_symmetry_vdw_refined r_symmetry_vdw_other r_symmetry_hbond_refined r_symmetry_hbond_other r_symmetry_metal_ion_refined r_symmetry_metal_ion_other r_rigid_bond_restr r_sphericity_free r_sphericity_bonded
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 8160 Nucleic Acid Atoms Solvent Atoms 3 Heterogen Atoms 41
Software Software Software Name Purpose BLU-MAX data collection PHASER phasing REFMAC refinement HKL-2000 data reduction HKL-2000 data scaling