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DTD from Plasmodium falciparum in complex with D-Histidine
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION, HANGING DROP 293 25% PEG 1500, VAPOR DIFFUSION, HANGING DROP, temperature 293K
Crystal Properties Matthews coefficient Solvent content 2.14 42.49
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 52.048 α = 107.07 b = 55.011 β = 101.84 c = 93.244 γ = 94.81
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 IMAGE PLATE MAR scanner 345 mm plate 2008-10-17 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 ROTATING ANODE RIGAKU MICROMAX-007 1.5418
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 2.91 30 97.3 0.038 14.7 1.9 20330
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R Merge I (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 2.91 3.01 93.3 0.305 1.8 1928
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION MOLECULAR REPLACEMENT THROUGHOUT 2.91 30 20327 1036 97.09 0.193 0.189 0.1901 0.276 0.2631 RANDOM 81.064
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] -1.15 -2.01 1.81 0.8 1.88 1.86
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 43.909 r_dihedral_angle_4_deg 22.714 r_dihedral_angle_3_deg 20.093 r_dihedral_angle_1_deg 6.607 r_scangle_it 1.747 r_angle_refined_deg 1.303 r_mcangle_it 1.043 r_scbond_it 1.041 r_mcbond_it 0.575 r_nbtor_refined 0.319
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 43.909 r_dihedral_angle_4_deg 22.714 r_dihedral_angle_3_deg 20.093 r_dihedral_angle_1_deg 6.607 r_scangle_it 1.747 r_angle_refined_deg 1.303 r_mcangle_it 1.043 r_scbond_it 1.041 r_mcbond_it 0.575 r_nbtor_refined 0.319 r_nbd_refined 0.226 r_symmetry_vdw_refined 0.181 r_symmetry_hbond_refined 0.18 r_xyhbond_nbd_refined 0.165 r_chiral_restr 0.087 r_bond_refined_d 0.011 r_gen_planes_refined 0.004
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 7318 Nucleic Acid Atoms Solvent Atoms Heterogen Atoms 22
Software Software Software Name Purpose DENZO data reduction SCALEPACK data scaling MOLREP phasing REFMAC refinement PDB_EXTRACT data extraction HKL-2000 data reduction