3KMS

G62S mutant of foot-and-mouth disease virus RNA-polymerase in complex with a template- primer RNA trigonal structure


X-RAY DIFFRACTION

Crystallization

Crystalization Experiments
IDMethodpHTemperatureDetails
1VAPOR DIFFUSION, HANGING DROP729328% PEG 4000, 0.2M magnesium acetate, 0.1M HEPES pH 7.0, 4% butyrolactone, VAPOR DIFFUSION, HANGING DROP, temperature 293K
Crystal Properties
Matthews coefficientSolvent content
2.2244.66

Crystal Data

Unit Cell
Length ( Å )Angle ( ˚ )
a = 93.951α = 90
b = 93.951β = 90
c = 99.997γ = 120
Symmetry
Space GroupP 32 2 1

Diffraction

Diffraction Experiment
ID #Crystal IDScattering TypeData Collection TemperatureDetectorDetector TypeDetailsCollection DateMonochromatorProtocol
11x-rayCCDADSC QUANTUM 315r2008-07-04MSINGLE WAVELENGTH
Radiation Source
ID #SourceTypeWavelength ListSynchrotron SiteBeamline
1SYNCHROTRONESRF BEAMLINE ID14-10.98ESRFID14-1

Data Collection

Overall
ID #Resolution (High)Resolution (Low)Percent Possible (Observed)R Merge I (Observed)R Sym I (Observed)Net I Over Average Sigma (I)RedundancyNumber Reflections (All)Number Reflections (Observed)Observed Criterion Sigma (F)Observed Criterion Sigma (I)B (Isotropic) From Wilson Plot
12.23099.10.0840.09415.85.52612522
Highest Resolution Shell
ID #Resolution (High)Resolution (Low)Percent Possible (All)Percent Possible (Observed)R Merge I (Observed)R-Sym I (Observed)Mean I Over Sigma (Observed)RedundancyNumber Unique Reflections (All)
2.212.3299.40.5750.6423.25.13753

Refinement

Statistics
Diffraction IDStructure Solution MethodCross Validation methodResolution (High)Resolution (Low)Number Reflections (Observed)Number Reflections (R-Free)Percent Reflections (Observed)R-Factor (Observed)R-WorkR-FreeR-Free Selection DetailsMean Isotropic B
X-RAY DIFFRACTIONMOLECULAR REPLACEMENTTHROUGHOUT2.229.424756132098.970.237580.236130.26566RANDOM51.628
Temperature Factor Modeling
Anisotropic B[1][1]Anisotropic B[1][2]Anisotropic B[1][3]Anisotropic B[2][2]Anisotropic B[2][3]Anisotropic B[3][3]
-0.25-0.13-0.250.38
RMS Deviations
KeyRefinement Restraint Deviation
r_dihedral_angle_2_deg31.782
r_dihedral_angle_4_deg14.134
r_dihedral_angle_3_deg13.411
r_dihedral_angle_1_deg4.511
r_angle_refined_deg0.858
r_scangle_it0.655
r_scbond_it0.433
r_mcangle_it0.391
r_nbtor_refined0.291
r_mcbond_it0.222
RMS Deviations
KeyRefinement Restraint Deviation
r_dihedral_angle_2_deg31.782
r_dihedral_angle_4_deg14.134
r_dihedral_angle_3_deg13.411
r_dihedral_angle_1_deg4.511
r_angle_refined_deg0.858
r_scangle_it0.655
r_scbond_it0.433
r_mcangle_it0.391
r_nbtor_refined0.291
r_mcbond_it0.222
r_nbd_refined0.17
r_xyhbond_nbd_refined0.149
r_symmetry_vdw_refined0.122
r_symmetry_hbond_refined0.086
r_chiral_restr0.058
r_bond_refined_d0.006
r_gen_planes_refined0.002
r_bond_other_d
r_angle_other_deg
r_gen_planes_other
r_nbd_other
r_nbtor_other
r_xyhbond_nbd_other
r_metal_ion_refined
r_metal_ion_other
r_symmetry_vdw_other
r_symmetry_hbond_other
r_symmetry_metal_ion_refined
r_symmetry_metal_ion_other
r_mcbond_other
r_rigid_bond_restr
r_sphericity_free
r_sphericity_bonded
Non-Hydrogen Atoms Used in Refinement
Non-Hydrogen AtomsNumber
Protein Atoms3731
Nucleic Acid Atoms251
Solvent Atoms68
Heterogen Atoms1

Software

Software
Software NamePurpose
DNAdata collection
AMoREphasing
REFMACrefinement
MOSFLMdata reduction
SCALAdata scaling