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Crystal structure of native abscisic acid receptor PYL3
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 EVAPORATION 8 298 20mM tris, 2.0M ammonium sulfate, pH 8, EVAPORATION, temperature 298K
Crystal Properties Matthews coefficient Solvent content 3.12 60.62
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 86.964 α = 90 b = 86.964 β = 90 c = 154.118 γ = 90
Symmetry Space Group P 41 21 2
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 130 CCD ADSC QUANTUM 270 2009-10-25 M SAD 2 1 x-ray 130 CCD ADSC QUANTUM 270 2009-10-25 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON PHOTON FACTORY BEAMLINE AR-NE3A 1.0 Photon Factory AR-NE3A 2 SYNCHROTRON PHOTON FACTORY BEAMLINE AR-NW12A 1.0 Photon Factory AR-NW12A
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Sym I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1,2 2.5 20 95.8 0.055 21065 19933 3 3
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1,2 2.5 2.56 7.2
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Resolution (High) Resolution (Low) Number Reflections (All) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION SAD THROUGHOUT 2.5 20 21065 19933 1049 99.37 0.25298 0.25206 0.2616 0.26959 0.2736 RANDOM 71.891
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] -0.36 -0.36 0.72
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 36.11 r_dihedral_angle_4_deg 18.15 r_dihedral_angle_3_deg 17.672 r_dihedral_angle_1_deg 6.381 r_scangle_it 1.804 r_angle_refined_deg 1.147 r_mcangle_it 1.144 r_scbond_it 1.045 r_mcbond_it 0.627 r_chiral_restr 0.079
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 36.11 r_dihedral_angle_4_deg 18.15 r_dihedral_angle_3_deg 17.672 r_dihedral_angle_1_deg 6.381 r_scangle_it 1.804 r_angle_refined_deg 1.147 r_mcangle_it 1.144 r_scbond_it 1.045 r_mcbond_it 0.627 r_chiral_restr 0.079 r_bond_refined_d 0.008 r_gen_planes_refined 0.004 r_bond_other_d r_angle_other_deg r_gen_planes_other r_nbd_refined r_nbd_other r_nbtor_refined r_nbtor_other r_xyhbond_nbd_refined r_xyhbond_nbd_other r_metal_ion_refined r_metal_ion_other r_symmetry_vdw_refined r_symmetry_vdw_other r_symmetry_hbond_refined r_symmetry_hbond_other r_symmetry_metal_ion_refined r_symmetry_metal_ion_other r_mcbond_other r_rigid_bond_restr r_sphericity_free r_sphericity_bonded
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 2749 Nucleic Acid Atoms Solvent Atoms 124 Heterogen Atoms 10
Software Software Software Name Purpose ADSC data collection SHARP phasing REFMAC refinement HKL-2000 data reduction HKL-2000 data scaling