☰ Navigation Tabs
Crystal structure of Lactobacillus reuteri N-terminally truncated glucansucrase GTF180-maltose complex
Starting Model(s) Initial Refinement Model(s) Type Source Accession Code Details experimental model PDB 3KLK PDB ENTRY 3KLK
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION, HANGING DROP 6 293 PEG 3350, BIS-TRIS propane buffer, CaCl2, pH 6.0, vapor diffusion, hanging drop, temperature 293K
Crystal Properties Matthews coefficient Solvent content 2.52 51.1
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 58.165 α = 73.44 b = 65.85 β = 78.57 c = 82.317 γ = 86.34
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 CCD MAR CCD 165 mm 2006-02-24 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON EMBL/DESY, HAMBURG BEAMLINE BW7A 0.9760 EMBL/DESY, HAMBURG BW7A
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Sym I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 1.997 38.747 97.5 0.053 2.4 75992
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R-Sym I (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 2 2.1 94 0.171 4.3 2.4 10726
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Starting model Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION MOLECULAR REPLACEMENT THROUGHOUT PDB ENTRY 3KLK 2 20 75815 3823 97.87 0.165 0.163 0.1702 0.199 0.2049 RANDOM 29.568
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] 0.71 -2.65 0.91 0.62 0.11 -1.41
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 37.976 r_dihedral_angle_4_deg 14.847 r_dihedral_angle_3_deg 13.16 r_dihedral_angle_1_deg 6.245 r_scangle_it 3.304 r_scbond_it 2.202 r_angle_refined_deg 1.403 r_mcangle_it 1.351 r_mcbond_it 0.775 r_chiral_restr 0.099
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 37.976 r_dihedral_angle_4_deg 14.847 r_dihedral_angle_3_deg 13.16 r_dihedral_angle_1_deg 6.245 r_scangle_it 3.304 r_scbond_it 2.202 r_angle_refined_deg 1.403 r_mcangle_it 1.351 r_mcbond_it 0.775 r_chiral_restr 0.099 r_bond_refined_d 0.015 r_gen_planes_refined 0.007
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 7983 Nucleic Acid Atoms Solvent Atoms 758 Heterogen Atoms 117
Software Software Software Name Purpose SCALA data scaling PHASER phasing REFMAC refinement PDB_EXTRACT data extraction DNA data collection XDS data reduction