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Crystal structure of Putative phosphoribosylformylglycinamidine cyclo-ligase (YP_676759.1) from CYTOPHAGA HUTCHINSONII ATCC 33406 at 1.50 A resolution
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION, SITTING DROP 7.8 277 0.2000M KAcetate, 20.0000% PEG-3350, No Buffer pH 7.8, NANODROP, VAPOR DIFFUSION, SITTING DROP, temperature 277K
Crystal Properties Matthews coefficient Solvent content 2.06 40.2
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 70.93 α = 90 b = 95.182 β = 90 c = 106.277 γ = 90
Symmetry Space Group P 21 21 21
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 CCD MARMOSAIC 325 mm CCD Flat mirror (vertical focusing) 2009-03-27 M MAD
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON SSRL BEAMLINE BL11-1 0.91837,0.97908 SSRL BL11-1
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) R Sym I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 1.5 29.501 98.5 0.077 0.077 9.7 3.5 113854 13.606
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R Merge I (Observed) R-Sym I (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 1.5 1.54 86.3 0.376 0.376 2 2.5 7300
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION MAD THROUGHOUT 1.5 29.501 113785 5698 98.5 0.16 0.159 0.187 0.2062 RANDOM 12.604
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] 0.23 -0.78 0.55
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 33.212 r_dihedral_angle_4_deg 21.707 r_dihedral_angle_3_deg 11.281 r_dihedral_angle_1_deg 6.067 r_scangle_it 5.689 r_scbond_it 3.721 r_mcangle_it 2.448 r_mcbond_it 1.539 r_angle_refined_deg 1.509 r_angle_other_deg 0.972
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 33.212 r_dihedral_angle_4_deg 21.707 r_dihedral_angle_3_deg 11.281 r_dihedral_angle_1_deg 6.067 r_scangle_it 5.689 r_scbond_it 3.721 r_mcangle_it 2.448 r_mcbond_it 1.539 r_angle_refined_deg 1.509 r_angle_other_deg 0.972 r_mcbond_other 0.467 r_chiral_restr 0.097 r_bond_refined_d 0.016 r_gen_planes_refined 0.009 r_gen_planes_other 0.003 r_bond_other_d 0.001
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 5605 Nucleic Acid Atoms Solvent Atoms 921 Heterogen Atoms 52
Software Software Software Name Purpose REFMAC refinement PHENIX refinement SHELX phasing MolProbity model building SCALA data scaling PDB_EXTRACT data extraction MOSFLM data reduction SHELXD phasing autoSHARP phasing