☰ Navigation Tabs
Crystal structure of the calcium-loaded calmodulin-like domain of the CDPK, 541.m00134 from toxoplasma gondii
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION, HANGING DROP 6.5 293 24 % PEG3350,
0.1 M NH4SO4,
0.1 M BisTris 6.5,
2 mM CaCl2,
4 mM MgCl2, VAPOR DIFFUSION, HANGING DROP, temperature 293K
Crystal Properties Matthews coefficient Solvent content 2.86 56.97
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 45.838 α = 90 b = 101.015 β = 90 c = 107.87 γ = 90
Symmetry Space Group P 21 21 21
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 CCD ADSC QUANTUM 315 2009-10-14 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON APS BEAMLINE 19-ID .97932 APS 19-ID
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 1.95 35 100 0.156 3.8 7 37365 22.6
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R Merge I (Observed) R-Sym I (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1.95 2 100 0.878 0.64 2.58 6.5 2468
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Resolution (High) Resolution (Low) Number Reflections (All) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (All) R-Factor (Observed) R-Work (Depositor) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION MOLECULAR REPLACEMENT THROUGHOUT 1.95 35 37348 37266 1864 99.78 0.204 0.204 0.201 0.277 0.2723 RANDOM 21.546
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] -0.38 1.82 -1.44
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 32.991 r_dihedral_angle_4_deg 16.899 r_dihedral_angle_3_deg 16.058 r_scangle_it 6.627 r_dihedral_angle_1_deg 5.374 r_scbond_it 4.503 r_mcangle_it 2.48 r_rigid_bond_restr 1.994 r_angle_refined_deg 1.814 r_mcbond_it 1.596
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 32.991 r_dihedral_angle_4_deg 16.899 r_dihedral_angle_3_deg 16.058 r_scangle_it 6.627 r_dihedral_angle_1_deg 5.374 r_scbond_it 4.503 r_mcangle_it 2.48 r_rigid_bond_restr 1.994 r_angle_refined_deg 1.814 r_mcbond_it 1.596 r_angle_other_deg 1.072 r_mcbond_other 0.513 r_chiral_restr 0.117 r_bond_refined_d 0.024 r_gen_planes_refined 0.007 r_gen_planes_other 0.002 r_bond_other_d 0.001
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 2987 Nucleic Acid Atoms Solvent Atoms 364 Heterogen Atoms 29
Software Software Software Name Purpose DENZO data reduction SCALEPACK data scaling REFMAC refinement PDB_EXTRACT data extraction JBluIce-EPICS data collection BALBES phasing