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Crystal Structure of PFF1300w.
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION, SITTING DROP 8.5 293 10 % PEG8k,
0.2 M Tris HCl,
4 mM MgAcetate,
2 mM AMPPNP,
2 mM NaPyruvate,
2 mM TCEP,
25% glycerol cryoprotectant, pH 8.5, VAPOR DIFFUSION, SITTING DROP, temperature 293K
Crystal Properties Matthews coefficient Solvent content 2.81 56.27
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 108.749 α = 90 b = 94.285 β = 94.6 c = 125.164 γ = 90
Symmetry Space Group P 1 21 1
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 CCD MARMOSAIC 225 mm CCD 2009-09-10 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON CLSI BEAMLINE 08ID-1 .97920 CLSI 08ID-1
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) R Sym I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 2.7 50 99.6 0.102 0.075 8.3 3.8 69260 68983 69.3
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R Merge I (Observed) R-Sym I (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 2.7 2.75 99.3 0.823 0.638 1.57 3.7 3393
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Resolution (High) Resolution (Low) Number Reflections (All) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (All) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION MOLECULAR REPLACEMENT THROUGHOUT 2.7 35 69484 68588 3463 98.71 0.264 0.264 0.262 0.2587 0.297 0.2931 RANDOM 29.798
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] -2.58 0.62 1.05 1.64
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 41.471 r_dihedral_angle_4_deg 17.323 r_dihedral_angle_3_deg 16.812 r_dihedral_angle_1_deg 4.202 r_angle_refined_deg 0.879 r_scangle_it 0.758 r_scbond_it 0.42 r_mcangle_it 0.258 r_mcbond_it 0.133 r_chiral_restr 0.053
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 41.471 r_dihedral_angle_4_deg 17.323 r_dihedral_angle_3_deg 16.812 r_dihedral_angle_1_deg 4.202 r_angle_refined_deg 0.879 r_scangle_it 0.758 r_scbond_it 0.42 r_mcangle_it 0.258 r_mcbond_it 0.133 r_chiral_restr 0.053 r_bond_refined_d 0.006 r_gen_planes_refined 0.003
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 12367 Nucleic Acid Atoms Solvent Atoms 1 Heterogen Atoms
Software Software Software Name Purpose DENZO data reduction SCALEPACK data scaling PHASER phasing REFMAC refinement PDB_EXTRACT data extraction Blu-Ice data collection