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Crystal structure of the periplasmic soluble domain of oxidized CcmG from Pseudomonas aeruginosa
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION, HANGING DROP 5.6 294 18-20% PEG 4000, 0.1-0.3M Magnesium formate, 0.1M sodium citrate pH 5.6, 5% MPD, VAPOR DIFFUSION, HANGING DROP, temperature 294K
Crystal Properties Matthews coefficient Solvent content 2.29 46.26
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 74.099 α = 90 b = 74.099 β = 90 c = 65.229 γ = 90
Symmetry Space Group P 41 21 2
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 CCD MAR CCD 165 mm 2008-05-08 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON BESSY BEAMLINE 14.2 0.91841 BESSY 14.2
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) R Sym I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 2.2 52.414 99.5 0.077 0.077 22.2 7.6 9678 9665
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R Merge I (Observed) R-Sym I (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 2.2 2.32 97.2 0.3 0.3 2.1 7.5 1333
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION FOURIER SYNTHESIS THROUGHOUT 2.2 33.14 9629 460 99.51 0.192 0.19 0.19 0.23 0.2284 RANDOM 20.491
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] -1.13 -1.13 2.25
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 34.587 r_dihedral_angle_4_deg 18.2 r_dihedral_angle_3_deg 13.298 r_dihedral_angle_1_deg 5.723 r_scangle_it 2.48 r_scbond_it 1.584 r_angle_refined_deg 1.184 r_mcangle_it 1.023 r_mcbond_it 0.59 r_nbtor_refined 0.303
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 34.587 r_dihedral_angle_4_deg 18.2 r_dihedral_angle_3_deg 13.298 r_dihedral_angle_1_deg 5.723 r_scangle_it 2.48 r_scbond_it 1.584 r_angle_refined_deg 1.184 r_mcangle_it 1.023 r_mcbond_it 0.59 r_nbtor_refined 0.303 r_symmetry_vdw_refined 0.195 r_nbd_refined 0.186 r_symmetry_hbond_refined 0.158 r_xyhbond_nbd_refined 0.125 r_chiral_restr 0.07 r_bond_refined_d 0.01 r_gen_planes_refined 0.004
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 1207 Nucleic Acid Atoms Solvent Atoms 95 Heterogen Atoms
Software Software Software Name Purpose MOSFLM data reduction SCALA data scaling REFMAC refinement PDB_EXTRACT data extraction MAR345dtb data collection