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Crystal structure of human Cu/Zn superoxide dismutase recombinantly produced in Leishmania tarantolae; P6522 crystal form containing 6 chains in the asymmetric unit
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION, HANGING DROP 292 21-25% (w/v) PEG4000, 0.1 M NaOAc, pH 4.2-5.2, vapor diffusion, hanging drop, temperature 292K
Crystal Properties Matthews coefficient Solvent content 4.1 69.97
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 112.188 α = 90 b = 112.188 β = 90 c = 428.268 γ = 120
Symmetry Space Group P 65 2 2
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 CCD MARMOSAIC 225 mm CCD SI(111) 2009-10-08 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON SLS BEAMLINE X10SA 1.0 SLS X10SA
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 3.5 49.69 99.9 0.172 13.13 21168 -3 47.084
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R Merge I (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 3.5 3.6 100 0.586 4.2
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION THROUGHOUT 3.5 49.69 21168 1088 99.92 0.201 0.201 0.186 0.208 0.1996 RANDOM 90.385
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] -8.44 -4.22 -8.44 12.65
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 40.163 r_dihedral_angle_3_deg 18.979 r_dihedral_angle_4_deg 11.035 r_dihedral_angle_1_deg 7.179 r_angle_other_deg 4.332 r_scangle_it 2.63 r_angle_refined_deg 1.434 r_scbond_it 1.405 r_mcangle_it 0.933 r_mcbond_it 0.447
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 40.163 r_dihedral_angle_3_deg 18.979 r_dihedral_angle_4_deg 11.035 r_dihedral_angle_1_deg 7.179 r_angle_other_deg 4.332 r_scangle_it 2.63 r_angle_refined_deg 1.434 r_scbond_it 1.405 r_mcangle_it 0.933 r_mcbond_it 0.447 r_chiral_restr 0.08 r_bond_refined_d 0.017 r_gen_planes_refined 0.006 r_gen_planes_other 0.004 r_bond_other_d r_mcbond_other
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 6660 Nucleic Acid Atoms Solvent Atoms Heterogen Atoms 12
Software Software Software Name Purpose XSCALE data scaling REFMAC refinement PDB_EXTRACT data extraction