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Human dCK complex with 5-Me dC and ADP
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION 7.5 293 0.8 M Sodium citrate, pH 7.5, VAPOR DIFFUSION, temperature 293K
Crystal Properties Matthews coefficient Solvent content 2.11 41.83
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 52.74 α = 90 b = 132.95 β = 90 c = 156.89 γ = 90
Symmetry Space Group C 2 2 21
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 IMAGE PLATE RIGAKU RAXIS IV 2009-03-28 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 ROTATING ANODE RIGAKU 1.54
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) R Sym I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 1.96 30 99 0.193 0.23 23 39888
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1.96 2.08 95.5 4.1
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION MOLECULAR REPLACEMENT THROUGHOUT 1.96 30 34560 3823 95.24 0.19339 0.18837 0.1888 0.23956 0.2372 RANDOM 28.039
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] 0.28 0.15 -0.43
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 39.819 r_dihedral_angle_4_deg 19.148 r_dihedral_angle_3_deg 16.698 r_dihedral_angle_1_deg 5.844 r_scangle_it 3.255 r_scbond_it 2.171 r_mcangle_it 1.523 r_angle_refined_deg 1.501 r_mcbond_it 0.885 r_nbtor_refined 0.308
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 39.819 r_dihedral_angle_4_deg 19.148 r_dihedral_angle_3_deg 16.698 r_dihedral_angle_1_deg 5.844 r_scangle_it 3.255 r_scbond_it 2.171 r_mcangle_it 1.523 r_angle_refined_deg 1.501 r_mcbond_it 0.885 r_nbtor_refined 0.308 r_symmetry_vdw_refined 0.254 r_symmetry_hbond_refined 0.238 r_nbd_refined 0.202 r_xyhbond_nbd_refined 0.175 r_chiral_restr 0.099 r_bond_refined_d 0.013 r_gen_planes_refined 0.006
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 3850 Nucleic Acid Atoms Solvent Atoms 253 Heterogen Atoms 88
Software Software Software Name Purpose CrystalClear data collection MOLREP phasing REFMAC refinement XDS data reduction XDS data scaling