☰ Navigation Tabs
Crystal structure of the autoproteolytic domain from the nuclear pore complex component NUP145 from Saccharomyces cerevisiae
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION, SITTING DROP 7.5 294 100mM HEPES, 25% PEG 3350, 200mM NaCl, pH 7.5, VAPOR DIFFUSION, SITTING DROP, temperature 294K
Crystal Properties Matthews coefficient Solvent content 2.75 55.29
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 91.037 α = 90 b = 91.037 β = 90 c = 108.394 γ = 90
Symmetry Space Group P 43 21 2
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 CCD RAYONIX MX225HE 2009-08-01 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON APS BEAMLINE 31-ID 0.97929 APS 31-ID
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Sym I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 1.82 28.78 99.9 0.095 22.9 29.1 41497 23.1
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R-Sym I (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 1.82 1.92 100 0.546 8.8 29.4 5943
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION SAD THROUGHOUT 1.82 27.67 41422 2088 99.93 0.214 0.213 0.2199 0.244 0.2506 RANDOM 29.85
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] -0.01 -0.01 0.02
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 35.471 r_dihedral_angle_3_deg 13.111 r_dihedral_angle_4_deg 10.818 r_dihedral_angle_1_deg 5.85 r_scangle_it 4.306 r_scbond_it 3.047 r_mcangle_it 2.087 r_mcbond_it 1.795 r_angle_refined_deg 1.662 r_angle_other_deg 0.953
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 35.471 r_dihedral_angle_3_deg 13.111 r_dihedral_angle_4_deg 10.818 r_dihedral_angle_1_deg 5.85 r_scangle_it 4.306 r_scbond_it 3.047 r_mcangle_it 2.087 r_mcbond_it 1.795 r_angle_refined_deg 1.662 r_angle_other_deg 0.953 r_mcbond_other 0.364 r_symmetry_vdw_other 0.219 r_nbd_refined 0.209 r_nbd_other 0.199 r_nbtor_refined 0.191 r_xyhbond_nbd_refined 0.191 r_symmetry_vdw_refined 0.147 r_symmetry_hbond_refined 0.107 r_chiral_restr 0.1 r_nbtor_other 0.088 r_xyhbond_nbd_other 0.025 r_bond_refined_d 0.02 r_gen_planes_refined 0.008 r_bond_other_d 0.001 r_gen_planes_other 0.001
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 2293 Nucleic Acid Atoms Solvent Atoms 234 Heterogen Atoms 68
Software Software Software Name Purpose REFMAC refinement PDB_EXTRACT data extraction MOSFLM data reduction SCALA data scaling SHELX phasing SHELXD phasing SHELXE model building