☰ Navigation Tabs
Crystal structure of 6-hydroxy-L-nicotine oxidase from Arthrobacter nicotinovorans
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION, SITTING DROP 7.5 298 20mM Sodium phosphate, 4M sodium formiate, pH 7.5, VAPOR DIFFUSION, SITTING DROP, temperature 298K
Crystal Properties Matthews coefficient Solvent content 3.96 68.95
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 163.919 α = 90 b = 163.92 β = 90 c = 163.919 γ = 90
Symmetry Space Group P 4 3 2
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 CCD MAR CCD 165 mm mirrors 2000-09-23 M SINGLE WAVELENGTH 2 1 x-ray 100 CCD MAR CCD 165 mm mirrors 2000-09-24 M MAD 3 1 x-ray 100 CCD MAR CCD 165 mm mirrors 2000-09-24 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON MPG/DESY, HAMBURG BEAMLINE BW6 1.05 MPG/DESY, HAMBURG BW6 2 SYNCHROTRON MPG/DESY, HAMBURG BEAMLINE BW6 1.05, 0.9185, 0.9207, 0.900 MPG/DESY, HAMBURG BW6 3 SYNCHROTRON MPG/DESY, HAMBURG BEAMLINE BW6 1.05 MPG/DESY, HAMBURG BW6
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) R Sym I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1,2,3 1.95 20 99.6 0.059 0.059 28.9 15 55137 54917 2 33.3
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R Merge I (Observed) R-Sym I (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1.95 2 94.3 0.623 0.623 3 7.5 3615
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Resolution (High) Resolution (Low) Number Reflections (All) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION MAD THROUGHOUT 1.95 14.4 52074 51689 2762 99.26 0.17796 0.17607 0.1935 0.2134 0.2199 RANDOM 33.324
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3]
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 37.248 r_dihedral_angle_4_deg 19.025 r_dihedral_angle_3_deg 14.595 r_dihedral_angle_1_deg 6.506 r_scangle_it 6.281 r_scbond_it 4.411 r_angle_refined_deg 2.63 r_mcangle_it 2.603 r_mcbond_it 1.863 r_nbtor_refined 0.327
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 37.248 r_dihedral_angle_4_deg 19.025 r_dihedral_angle_3_deg 14.595 r_dihedral_angle_1_deg 6.506 r_scangle_it 6.281 r_scbond_it 4.411 r_angle_refined_deg 2.63 r_mcangle_it 2.603 r_mcbond_it 1.863 r_nbtor_refined 0.327 r_symmetry_vdw_refined 0.324 r_symmetry_hbond_refined 0.278 r_chiral_restr 0.238 r_xyhbond_nbd_refined 0.236 r_nbd_refined 0.229 r_bond_refined_d 0.035 r_gen_planes_refined 0.016
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 3334 Nucleic Acid Atoms Solvent Atoms 618 Heterogen Atoms 96
Software Software Software Name Purpose MAR345 data collection SHELXS phasing REFMAC refinement DENZO data reduction SCALEPACK data scaling