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Crystal structure of the peripheral stalk of Thermus thermophilus H+-ATPase/synthase
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION, SITTING DROP 6.4 291 40% MPD, 0.1 M Cacodylate pH 6.4, 5% PEG 8000, VAPOR DIFFUSION, SITTING DROP, temperature 291K
Crystal Properties Matthews coefficient Solvent content 3.49 64.72
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 75.781 α = 90 b = 79.755 β = 97.64 c = 75.796 γ = 90
Symmetry Space Group P 1 21 1
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 CCD MAR CCD 165 mm 2008-07-15 SAD
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON APS BEAMLINE 14-ID-B 0.97957 APS 14-ID-B
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 3.1 30 20170 15485
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION SAD THROUGHOUT 3.1 29.66 15471 823 94.43 0.235 0.232 0.2524 0.288 0.2995 RANDOM 60.697
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] 16.77 -44.66 -36.02 19.25
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 35.025 r_dihedral_angle_3_deg 19.935 r_dihedral_angle_4_deg 16.317 r_dihedral_angle_1_deg 5.842 r_mcangle_it 1.127 r_scangle_it 1.061 r_angle_refined_deg 0.91 r_angle_other_deg 0.863 r_mcbond_it 0.642 r_scbond_it 0.588
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 35.025 r_dihedral_angle_3_deg 19.935 r_dihedral_angle_4_deg 16.317 r_dihedral_angle_1_deg 5.842 r_mcangle_it 1.127 r_scangle_it 1.061 r_angle_refined_deg 0.91 r_angle_other_deg 0.863 r_mcbond_it 0.642 r_scbond_it 0.588 r_mcbond_other 0.086 r_chiral_restr 0.049 r_bond_refined_d 0.006 r_gen_planes_refined 0.004 r_bond_other_d 0.001 r_gen_planes_other 0.001
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 4056 Nucleic Acid Atoms Solvent Atoms Heterogen Atoms
Software Software Software Name Purpose REFMAC refinement PDB_EXTRACT data extraction BioCARS data collection MOSFLM data reduction SCALA data scaling SHARP phasing