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Crystal structure of altronate hydrolase (fragment 1-84) from Shigella Flexneri.
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION 7 293 0.1 M HEPES pH=7.0, 5% tacsimate pH=7.0, 10% PEG 5K MME, VAPOR DIFFUSION, temperature 293K
Crystal Properties Matthews coefficient Solvent content 2.91 57.78
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 113.968 α = 90 b = 40.218 β = 104.33 c = 121.001 γ = 90
Symmetry Space Group P 1 21 1
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 CCD ADSC QUANTUM 315 MIRROR 2008-07-11 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON APS BEAMLINE 19-ID 0.9793 APS 19-ID
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) R Sym I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 2.15 50 100 0.095 0.095 18.184 4.5 59149 59149 -3 32.7
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R Merge I (Observed) R-Sym I (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 2.15 2.19 99.8 0.535 0.535 2.6 3.9 2907
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Resolution (High) Resolution (Low) Number Reflections (All) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (All) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION SAD THROUGHOUT 2.15 50 58766 58766 2965 99.8 0.176 0.176 0.174 0.1881 0.213 0.2245 RANDOM 15.04
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] 0.7 0.96 1.44 -1.66
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 34.157 r_dihedral_angle_4_deg 19.88 r_dihedral_angle_3_deg 13.712 r_dihedral_angle_1_deg 6.986 r_scangle_it 3.37 r_scbond_it 2.17 r_angle_refined_deg 1.514 r_mcangle_it 1.252 r_angle_other_deg 0.87 r_mcbond_it 0.695
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 34.157 r_dihedral_angle_4_deg 19.88 r_dihedral_angle_3_deg 13.712 r_dihedral_angle_1_deg 6.986 r_scangle_it 3.37 r_scbond_it 2.17 r_angle_refined_deg 1.514 r_mcangle_it 1.252 r_angle_other_deg 0.87 r_mcbond_it 0.695 r_mcbond_other 0.203 r_chiral_restr 0.094 r_bond_refined_d 0.016 r_bond_other_d 0.007 r_gen_planes_refined 0.005 r_gen_planes_other 0.001 r_nbd_refined r_nbd_other r_nbtor_refined r_nbtor_other r_xyhbond_nbd_refined r_xyhbond_nbd_other r_metal_ion_refined r_metal_ion_other r_symmetry_vdw_refined r_symmetry_vdw_other r_symmetry_hbond_refined r_symmetry_hbond_other r_symmetry_metal_ion_refined r_symmetry_metal_ion_other r_rigid_bond_restr r_sphericity_free r_sphericity_bonded
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 5077 Nucleic Acid Atoms Solvent Atoms 613 Heterogen Atoms 41
Software Software Software Name Purpose HKL-2000 data collection HKL-3000 phasing MLPHARE phasing DM model building SHELXD phasing RESOLVE model building REFMAC refinement HKL-2000 data reduction HKL-3000 data scaling DM phasing RESOLVE phasing