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Crystal structure of Rru_A2000 from Rhodospirillum rubrum: A cupin-2 domain.
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION, SITTING DROP 7.5 298 15 % MPD, 0.1M Sodium Hepes pH 7.5, 0.8M Potassium Sodium Tartrate tetrahydrate, VAPOR DIFFUSION, SITTING DROP, temperature 298K
Crystal Properties Matthews coefficient Solvent content 3.45 64.31
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 90.886 α = 90 b = 90.886 β = 90 c = 161.252 γ = 120
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 CCD ADSC QUANTUM 315 2009-08-02 SINGLE WAVELENGTH 2 1 CCD ADSC QUANTUM 315 2009-01-01
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON APS BEAMLINE 24-ID-E 0.9793 APS 24-ID-E 2 SYNCHROTRON NSLS BEAMLINE X29A 0.979 NSLS X29A
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 2.3 25 99.9 0.106 12.8 7 11778
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R Merge I (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 2.3 2.34 100 0.416 7.3 568
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION SAD THROUGHOUT 2.3 23.58 11648 560 99.85 0.227 0.225 0.2242 0.278 0.2718 RANDOM 60.11
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] 4.19 2.1 4.19 -6.29
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 32.646 r_dihedral_angle_4_deg 17.039 r_dihedral_angle_3_deg 14.691 r_dihedral_angle_1_deg 6.466 r_scangle_it 3.534 r_scbond_it 2.157 r_mcangle_it 1.705 r_angle_refined_deg 1.492 r_mcbond_it 0.906 r_chiral_restr 0.097
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 32.646 r_dihedral_angle_4_deg 17.039 r_dihedral_angle_3_deg 14.691 r_dihedral_angle_1_deg 6.466 r_scangle_it 3.534 r_scbond_it 2.157 r_mcangle_it 1.705 r_angle_refined_deg 1.492 r_mcbond_it 0.906 r_chiral_restr 0.097 r_bond_refined_d 0.014 r_gen_planes_refined 0.007
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 1138 Nucleic Acid Atoms Solvent Atoms 12 Heterogen Atoms 1
Software Software Software Name Purpose DENZO data reduction SCALEPACK data scaling REFMAC refinement PDB_EXTRACT data extraction ADSC data collection HKL-2000 data reduction PHENIX phasing