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Crystal structure of Fis bound to 27bp non consensus sequence DNA F6
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION, HANGING DROP 8.5 277 0.2 M Sodium citrate, 0.1 M TRIS-HCl pH 8.5, 36% PEG 400, vapor diffusion, hanging drop, temperature 277K
Crystal Properties Matthews coefficient Solvent content 4.08 69.84
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 43.24 α = 90 b = 95.22 β = 90 c = 154.87 γ = 90
Symmetry Space Group P 21 21 21
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 CCD ADSC QUANTUM 315 2007-03-05 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON ALS BEAMLINE 8.2.2 1.000 ALS 8.2.2
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 3.1 90 97.8 0.139 7.5 6.8 11963
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R Merge I (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 3.1 3.21 84.2 0.453 4.5 988
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION 3IV5 THROUGHOUT 3.11 81.11 10999 527 90.86 0.24 0.238 0.2357 0.278 0.2764 RANDOM 48.163
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3]
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 38.11 r_dihedral_angle_3_deg 18.414 r_dihedral_angle_4_deg 17.989 r_dihedral_angle_1_deg 5.082 r_angle_refined_deg 1.331 r_angle_other_deg 1.03 SIDE-CHAIN ANGLE REFINED ATOMS (A''2) 0.701 SIDE-CHAIN BOND REFINED ATOMS (A''2) 0.422 MAIN-CHAIN ANGLE REFINED ATOMS (A''2) 0.312 MAIN-CHAIN BOND REFINED ATOMS (A''2) 0.28
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 38.11 r_dihedral_angle_3_deg 18.414 r_dihedral_angle_4_deg 17.989 r_dihedral_angle_1_deg 5.082 r_angle_refined_deg 1.331 r_angle_other_deg 1.03 SIDE-CHAIN ANGLE REFINED ATOMS (A''2) 0.701 SIDE-CHAIN BOND REFINED ATOMS (A''2) 0.422 MAIN-CHAIN ANGLE REFINED ATOMS (A''2) 0.312 MAIN-CHAIN BOND REFINED ATOMS (A''2) 0.28 r_nbd_refined 0.209 r_nbtor_refined 0.207 r_nbd_other 0.192 r_symmetry_vdw_refined 0.189 r_symmetry_vdw_other 0.172 r_xyhbond_nbd_refined 0.137 r_symmetry_hbond_refined 0.137 r_nbtor_other 0.082 CHIRAL-CENTER RESTRAINTS (A''3) 0.055 MAIN-CHAIN BOND OTHER ATOMS (A''2) 0.03 r_bond_refined_d 0.007 r_gen_planes_refined 0.003 r_bond_other_d 0.001 r_gen_planes_other 0.001
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 1505 Nucleic Acid Atoms 1101 Solvent Atoms 8 Heterogen Atoms
Software Software Software Name Purpose DENZO data reduction SCALEPACK data scaling REFMAC refinement PDB_EXTRACT data extraction PHASER phasing