Find PDB structures and Computed Structure Models (CSM) by combining queries from tools in this suite: Attribute Search, Sequence Similarity, Sequence Motif, 3D Similarity, and 3D Motif with 'AND' logic.
Sample containing MMTV intasomes in SEC buffer (to which the detergent NP-40 was added to a final concentration of 0.05%) was applied onto a freshly p ...
Sample containing MMTV intasomes in SEC buffer (to which the detergent NP-40 was added to a final concentration of 0.05%) was applied onto a freshly plasma-treated (6s, Gatan Solarus plasma cleaner) holey carbon C-flat grid (CF-1.2/1.3-4C, Protochips, Inc.), allowing the sample to adsorb for 30 seconds and then plunge-freezing in liquid ethane using a manual cryo-plunger in an ambient environment of 4 degrees C.
3D Reconstruction
Reconstruction Method
SINGLE PARTICLE
Number of Particles
30307
Reported Resolution (Å)
4.8
Resolution Method
FSC 0.143 CUT-OFF
Other Details
Local FSC values range from 4-5 A. (Single particle details: IN-NTD and IN-CCD domains of flanking INs 5-8 were computationally removed using Relion a ...
Local FSC values range from 4-5 A. (Single particle details: IN-NTD and IN-CCD domains of flanking INs 5-8 were computationally removed using Relion after assignment of Euler angles to full octameric particles and masking out of flanking regions.) (Single particle - Applied symmetry: C2)
Refinement Type
Symmetry Type
POINT
Point Symmetry
C2
Map-Model Fitting and Refinement
Id
1 (5CZ1, 5CZ2, 5D7U)
Refinement Space
REAL
Refinement Protocol
OTHER
Refinement Target
FSC, Rosetta energy
Overall B Value
300
Fitting Procedure
Details
REFINEMENT PROTOCOL--real-space refinement DETAILS--Initial components solved
by X-ray were rigid-body docked. Linker regions were built de novo from ...
REFINEMENT PROTOCOL--real-space refinement DETAILS--Initial components solved
by X-ray were rigid-body docked. Linker regions were built de novo from the EM
density. The full model was refined using real-space methods in Rosetta.