Find PDB structures and Computed Structure Models (CSM) by combining queries from tools in this suite: Attribute Search, Sequence Similarity, Sequence Motif, 3D Similarity, and 3D Motif with 'AND' logic.
Quasi-human papillomavirus 16 complexed with H16.14J Fab
Sample Components
Human papillomavirus 16
H16.14J Fab
Specimen Preparation
Sample Aggregation State
PARTICLE
Vitrification Instrument
GATAN CRYOPLUNGE 3
Cryogen Name
ETHANE
Sample Vitrification Details
Blot for 0.7 seconds before plunging into liquid ethane (GATAN CRYOPLUNGE 3)
3D Reconstruction
Reconstruction Method
SINGLE PARTICLE
Number of Particles
5642
Reported Resolution (Å)
13.9
Resolution Method
FSC 0.5 CUT-OFF
Other Details
Semi-automatic particle selection was performed using e2boxer.py to obtain the particle coordinates, followed by particle boxing, linearization, norma ...
Semi-automatic particle selection was performed using e2boxer.py to obtain the particle coordinates, followed by particle boxing, linearization, normalization, and apodization of the images using Robem. Defocus and astigmatism values necessary to perform contrast transfer function (CTF) correction for the extracted particles were assessed using Robem. The icosahedrally averaged reconstruction was initiated using a random model generated with setup_rmc. For the last step of refinement, the final maps were CTF-corrected using a B factor of 200 A2. (Single particle--Applied symmetry: I)