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Blot for 1.5-2.5 seconds before plunging in liquid ethane.
3D Reconstruction
Reconstruction Method
TOMOGRAPHY
Number of Particles
Reported Resolution (Å)
30
Resolution Method
FSC 0.5 CUT-OFF
Other Details
Final maps were calculated by averaging 2800 particles from 41 tomograms. Axonemal repeats (96 nm long) from 41 tomograms (reconstructed using fiducia ...
Final maps were calculated by averaging 2800 particles from 41 tomograms. Axonemal repeats (96 nm long) from 41 tomograms (reconstructed using fiducial alignment and weighted backprojection, IMOD software, Kremer et al. 1996) were aligned and averaged using the PEET software (bio3d.colorado.edu, Nicastro et al. 2006). To obtain structures with consistent conformations, classification of the different conformational states of dynein was performed using a clustering approach implemented in PEET (Heumann et al. 2011).
Refinement Type
Symmetry Type
POINT
Point Symmetry
C1
Map-Model Fitting and Refinement
Id
1 (4AKI)
Refinement Space
Refinement Protocol
RIGID BODY FIT
Refinement Target
Cross-correlation coefficient
Overall B Value
Fitting Procedure
Details
REFINEMENT PROTOCOL--rigid body DETAILS--Initial local fitting was done using
Chimera and then manual adjustment was performed.