☰ Navigation Tabs
Electron Microscopy Analysis of a Disaccharide Analog complex Reveals Receptor Interactions of Adeno-Associated Virus
Starting Model(s) Initial Refinement Model(s) Type Source Accession Code Details experimental model PDB 3J1Q
Sample Recombinant Adeno-Associated Virus DJ
Specimen Preparation Sample Aggregation State PARTICLE Vitrification Instrument FEI VITROBOT MARK IV Cryogen Name ETHANE Sample Vitrification Details Both sides of the grid were blotted for 2.5 seconds before plunging in liquid ethane (FEI VITROBOT MARK IV).
3D Reconstruction Reconstruction Method SINGLE PARTICLE Number of Particles 45000 Reported Resolution (Å) 4.8 Resolution Method FSC 0.143 CUT-OFF Other Details Final map was amplitude corrected using embfactor. Refinement Type Symmetry Type POINT Point Symmetry I
Map-Model Fitting and Refinement Id 1 (3J1Q) Refinement Space REAL Refinement Protocol RIGID BODY FIT Refinement Target CC Overall B Value 25 Fitting Procedure Details REFINEMENT PROTOCOL--RIGID BODY
Data Acquisition Detector Type GATAN ULTRASCAN 4000 (4k x 4k) Electron Dose (electrons/Å**2) 15
Imaging Experiment 1 Date of Experiment 2013-04-15 Temperature (Kelvin) 94 Microscope Model FEI TITAN KRIOS Minimum Defocus (nm) 800 Maximum Defocus (nm) 2000 Minimum Tilt Angle (degrees) Maximum Tilt Angle (degrees) Nominal CS 2.7 Imaging Mode BRIGHT FIELD Specimen Holder Model FEI TITAN KRIOS AUTOGRID HOLDER Nominal Magnification 120000 Calibrated Magnification Source FIELD EMISSION GUN Acceleration Voltage (kV) 120 Imaging Details
EM Software Task Software Package Version MODEL FITTING UCSF Chimera RECONSTRUCTION Appion RECONSTRUCTION FREALIGN
Image Processing CTF Correction Type CTF Correction Details Number of Particles Selected Particle Selection Details each particle