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Empty coxsackievirus A9 capsid
Starting Model(s) Initial Refinement Model(s) Type Source Accession Code Details experimental model PDB 1D4M
Sample Empty coxsackievirus A9 capsid in complex with integrin alpha v beta 6
Specimen Preparation Sample Aggregation State PARTICLE Vitrification Instrument GATAN CRYOPLUNGE 3 Cryogen Name ETHANE Sample Vitrification Details manual plunging into liquid ethane (GATAN CRYOPLUNGE 3)
3D Reconstruction Reconstruction Method SINGLE PARTICLE Number of Particles 1200 Reported Resolution (Å) 9.54 Resolution Method FSC 0.5 CUT-OFF Other Details Refinement Type Symmetry Type POINT Point Symmetry I
Map-Model Fitting and Refinement Id 1 (1D4M, 1D4M, 1D4M) Refinement Space REAL Refinement Protocol FLEXIBLE FIT Refinement Target Overall B Value Fitting Procedure Details REFINEMENT PROTOCOL--flexible fitting
Imaging Experiment 1 Date of Experiment 2011-02-01 Temperature (Kelvin) Microscope Model FEI TECNAI F20 Minimum Defocus (nm) 830 Maximum Defocus (nm) 4120 Minimum Tilt Angle (degrees) Maximum Tilt Angle (degrees) Nominal CS Imaging Mode BRIGHT FIELD Specimen Holder Model GATAN LIQUID NITROGEN Nominal Magnification 62000 Calibrated Magnification 62000 Source FIELD EMISSION GUN Acceleration Voltage (kV) 200 Imaging Details
EM Software Task Software Package Version MODEL FITTING iMODFIT RECONSTRUCTION Auto3DEM
Image Processing CTF Correction Type CTF Correction Details Number of Particles Selected Particle Selection Details whole micrograph