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The pseudo-atomic structure of West Nile immature virus in complex with Fab fragments of the anti-fusion loop antibody E53
Starting Model(s) Initial Refinement Model(s) Type Source Accession Code Details experimental model PDB 2OF6 experimental model PDB 3C5X
Sample Immature West Nile Virus complexed with E53 Fab
Specimen Preparation Sample Aggregation State PARTICLE Vitrification Instrument HOMEMADE PLUNGER Cryogen Name ETHANE Sample Vitrification Details
3D Reconstruction Reconstruction Method SINGLE PARTICLE Number of Particles 3927 Reported Resolution (Å) 15 Resolution Method FSC 0.5 CUT-OFF Other Details Final maps were calculated from two averaged datasets ( Details about the particle: 400 mesh copper grid ) Refinement Type Symmetry Type POINT Point Symmetry I
Map-Model Fitting and Refinement Id 1 (2OF6) 2 (3C5X) Refinement Space REAL REAL Refinement Protocol RIGID BODY FIT RIGID BODY FIT Refinement Target Overall B Value Fitting Procedure Details REFINEMENT PROTOCOL--Rigid Body DETAILS--Each E molecule was divided into two
rigid bodies, DI-DIII and DII-pr REFINEMENT PROTOCOL--Rigid Body DETAILS--a model for WNV pr was generated by
SWISS-MODEL based on DENV pr structure
Data Acquisition Detector Type KODAK SO-163 FILM Electron Dose (electrons/Å**2) 12
Imaging Experiment 1 Date of Experiment 2008-01-08 Temperature (Kelvin) 98 Microscope Model FEI/PHILIPS CM300FEG/T Minimum Defocus (nm) 1193 Maximum Defocus (nm) 2859 Minimum Tilt Angle (degrees) -9999 Maximum Tilt Angle (degrees) -9999 Nominal CS 2 Imaging Mode BRIGHT FIELD Specimen Holder Model GATAN LIQUID NITROGEN Nominal Magnification 45000 Calibrated Magnification 47244 Source FIELD EMISSION GUN Acceleration Voltage (kV) 300 Imaging Details low dose
EM Software Task Software Package Version MODEL FITTING EMfit RECONSTRUCTION SPIDER RECONSTRUCTION Xmipp
Image Processing CTF Correction Type CTF Correction Details Number of Particles Selected Particle Selection Details Each particle