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Crystal Structure of the LasA virulence factor from Pseudomonas aeruginosa
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION, HANGING DROP 7 293 sodium potassium tartrate 400mM, pH 7, VAPOR DIFFUSION, HANGING DROP, temperature 293K
Crystal Properties Matthews coefficient Solvent content 1.88 34.73
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 34.964 α = 90 b = 58.838 β = 90 c = 146.438 γ = 90
Symmetry Space Group P 21 21 21
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 CCD CUSTOM-MADE 2003-02-28 M MAD
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON APS BEAMLINE 19-ID 1.28402, 1.28348, 1.2574 APS 19-ID
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 2.14 50 100 0.054 14.7 3.7 32280
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R Merge I (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 2.14 2.22 100 0.1 3.6 3264
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION MAD THROUGHOUT 2.14 37.57 17436 882 99.98 0.151 0.149 0.1541 0.195 0.2013 RANDOM 8.668
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] -0.17 0.44 -0.27
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 32.505 r_dihedral_angle_4_deg 14.293 r_dihedral_angle_3_deg 11.984 r_dihedral_angle_1_deg 6.409 r_scangle_it 2.135 r_scbond_it 1.249 r_angle_refined_deg 1.138 r_mcangle_it 0.823 r_mcbond_it 0.425 r_chiral_restr 0.078
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 32.505 r_dihedral_angle_4_deg 14.293 r_dihedral_angle_3_deg 11.984 r_dihedral_angle_1_deg 6.409 r_scangle_it 2.135 r_scbond_it 1.249 r_angle_refined_deg 1.138 r_mcangle_it 0.823 r_mcbond_it 0.425 r_chiral_restr 0.078 r_bond_refined_d 0.008 r_gen_planes_refined 0.004
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 2826 Nucleic Acid Atoms Solvent Atoms 391 Heterogen Atoms 40
Software Software Software Name Purpose DENZO data reduction SCALEPACK data scaling SOLVE phasing RESOLVE phasing REFMAC refinement PDB_EXTRACT data extraction