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Crystal Structure of human Haspin in complex with 5-Iodotubercidin
Starting Model(s) Initial Refinement Model(s) Type Source Accession Code Details experimental model PDB 2VUW
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION, SITTING DROP 7.5 277 0.4M (NH4)H2PO4, pH 7.5, VAPOR DIFFUSION, SITTING DROP, temperature 277K
Crystal Properties Matthews coefficient Solvent content 2.9 57.53
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 69.034 α = 90 b = 78.486 β = 90 c = 87.048 γ = 90
Symmetry Space Group P 21 21 21
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 IMAGE PLATE RIGAKU RAXIS IV 2008-11-03 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 ROTATING ANODE RIGAKU FR-E SUPERBRIGHT 1.5
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) R Sym I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 2 29.15 100 0.085 0.085 10.6 3.6 32676 32676 27.6
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R Merge I (Observed) R-Sym I (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 2 2.11 100 0.62 0.62 2 3.5 4697
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Starting model Resolution (High) Resolution (Low) Number Reflections (All) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (All) R-Factor (Observed) R-Work (Depositor) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION MOLECULAR REPLACEMENT THROUGHOUT 2VUW 2 29.15 32633 32620 1440 99.96 0.174 0.174 0.172 0.207 0.199 RANDOM 20.973
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] 0.67 0.24 -0.9
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 34.625 r_dihedral_angle_4_deg 14.328 r_dihedral_angle_3_deg 12.73 r_scangle_it 9.161 r_scbond_it 7.856 r_dihedral_angle_1_deg 6.197 r_mcangle_it 4.755 r_mcbond_it 3.5 r_angle_refined_deg 1.554 r_angle_other_deg 1.279
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 34.625 r_dihedral_angle_4_deg 14.328 r_dihedral_angle_3_deg 12.73 r_scangle_it 9.161 r_scbond_it 7.856 r_dihedral_angle_1_deg 6.197 r_mcangle_it 4.755 r_mcbond_it 3.5 r_angle_refined_deg 1.554 r_angle_other_deg 1.279 r_mcbond_other 1.217 r_chiral_restr 0.098 r_bond_refined_d 0.016 r_gen_planes_refined 0.007 r_bond_other_d 0.001 r_gen_planes_other 0.001
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 2599 Nucleic Acid Atoms Solvent Atoms 262 Heterogen Atoms 34
Software Software Software Name Purpose SCALA data scaling PHASER phasing REFMAC refinement PDB_EXTRACT data extraction CrystalClear data collection MOSFLM data reduction