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Crystal structure of the NusB101-S10(delta loop) complex
Starting Model(s) Initial Refinement Model(s) Type Source Accession Code Details experimental model PDB 3D3B PDB entry 3D3B
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION, SITTING DROP 7.5 293 0.2 M potassium citrate, 20 % PEG 3350, pH 7.5, VAPOR DIFFUSION, SITTING DROP, temperature 293K
Crystal Properties Matthews coefficient Solvent content 2.73 55.01
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 112.63 α = 90 b = 112.63 β = 90 c = 263.2 γ = 90
Symmetry Space Group I 41 2 2
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 CCD MARMOSAIC 225 mm CCD mirrors 2008-07-07 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON SLS BEAMLINE X10SA 0.9788 SLS X10SA
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Sym I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 2.5 30 100 0.086 18.1 7.2 29761 29761 52.7
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R-Sym I (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 2.5 2.6 100 0.725 4.1 7.4 3263
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Starting model Resolution (High) Resolution (Low) Number Reflections (All) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (All) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION MOLECULAR REPLACEMENT THROUGHOUT PDB entry 3D3B 2.5 30 29753 28265 1488 100 0.20693 0.20693 0.20431 0.2156 0.25582 0.2707 RANDOM 21.621
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] -0.2 -0.2 0.4
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 34.308 r_dihedral_angle_3_deg 18.251 r_dihedral_angle_4_deg 18.193 r_dihedral_angle_1_deg 5.887 r_scangle_it 2.477 r_scbond_it 1.429 r_angle_refined_deg 1.217 r_mcangle_it 0.82 r_mcbond_it 0.414 r_chiral_restr 0.081
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 34.308 r_dihedral_angle_3_deg 18.251 r_dihedral_angle_4_deg 18.193 r_dihedral_angle_1_deg 5.887 r_scangle_it 2.477 r_scbond_it 1.429 r_angle_refined_deg 1.217 r_mcangle_it 0.82 r_mcbond_it 0.414 r_chiral_restr 0.081 r_bond_refined_d 0.01 r_gen_planes_refined 0.005
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 5286 Nucleic Acid Atoms Solvent Atoms 155 Heterogen Atoms 1
Software Software Software Name Purpose MAR345dtb data collection MOLREP phasing REFMAC refinement XDS data reduction XDS data scaling