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Crystal structure of Putative molybdenum carrier protein (YP_461806.1) from SYNTROPHUS ACIDITROPHICUS SB at 1.45 A resolution
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION, SITTING DROP 6 277 10.0000% Glycerol, 5.0000% PEG-1000, 30.0000% PEG-600, 0.1M MES pH 6.0, NANODROP, VAPOR DIFFUSION, SITTING DROP, temperature 277K
Crystal Properties Matthews coefficient Solvent content 2.27 45.88
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 41.25 α = 90 b = 59.255 β = 90 c = 64.953 γ = 90
Symmetry Space Group P 21 21 21
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 CCD MARMOSAIC 325 mm CCD Flat collimating mirror, toroid focusing mirror 2009-05-13 M MAD
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON SSRL BEAMLINE BL9-2 0.91837,0.97936,0.97922 SSRL BL9-2
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 1.45 28.479 98.4 0.05 15.2 28613 -3 15.264
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R Merge I (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 1.45 1.5 93.3 0.593 2.3
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION MAD THROUGHOUT 1.45 28.479 28572 1450 98.89 0.154 0.152 0.1603 0.177 0.1855 RANDOM 17.087
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] 0.39 -0.1 -0.29
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 34.395 r_dihedral_angle_3_deg 10.987 r_dihedral_angle_4_deg 8.099 r_dihedral_angle_1_deg 5.214 r_scangle_it 5.211 r_scbond_it 3.868 r_mcangle_it 2.161 r_mcbond_it 1.649 r_angle_refined_deg 1.515 r_angle_other_deg 0.942
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 34.395 r_dihedral_angle_3_deg 10.987 r_dihedral_angle_4_deg 8.099 r_dihedral_angle_1_deg 5.214 r_scangle_it 5.211 r_scbond_it 3.868 r_mcangle_it 2.161 r_mcbond_it 1.649 r_angle_refined_deg 1.515 r_angle_other_deg 0.942 r_mcbond_other 0.388 r_nbd_refined 0.227 r_symmetry_vdw_other 0.224 r_nbd_other 0.19 r_nbtor_refined 0.174 r_xyhbond_nbd_refined 0.146 r_symmetry_hbond_refined 0.131 r_symmetry_vdw_refined 0.104 r_chiral_restr 0.096 r_nbtor_other 0.088 r_bond_refined_d 0.016 r_gen_planes_refined 0.008 r_bond_other_d 0.001 r_gen_planes_other 0.001
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 1208 Nucleic Acid Atoms Solvent Atoms 203 Heterogen Atoms 55
Software Software Software Name Purpose REFMAC refinement PHENIX refinement SHELX phasing MolProbity model building XSCALE data scaling PDB_EXTRACT data extraction XDS data reduction SHARP phasing