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Crystal structure of mouse Ryanodine Receptor 2 mutant V186M
Starting Model(s) Initial Refinement Model(s) Type Source Accession Code Details experimental model PDB 1XZZ PDB entry 1XZZ, IP3 receptor NTD
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION, HANGING DROP 4.6 294 0.2M sodium malonate, 5-15% saturated ammonium sulphate, pH 4.6, VAPOR DIFFUSION, HANGING DROP, temperature 294K
Crystal Properties Matthews coefficient Solvent content 2.4 48.82
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 112.512 α = 90 b = 112.512 β = 90 c = 36.751 γ = 90
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 CCD MARMOSAIC 225 mm CCD 2008-09-27 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON CLSI BEAMLINE 08ID-1 0.97949 CLSI 08ID-1
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Sym I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 1.7 79.56 99.7 0.101 20.6 6.3 25132 25132
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R-Sym I (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1.7 1.73 100 0.577 2.4 5.7
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Starting model Resolution (High) Resolution (Low) Number Reflections (All) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION MOLECULAR REPLACEMENT THROUGHOUT PDB entry 1XZZ, IP3 receptor NTD 1.7 79.56 24268 24268 1306 99.73 0.20336 0.20126 0.203 0.24403 0.2433 RANDOM 23.145
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] 0.52 0.52 -1.04
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 29.872 r_dihedral_angle_4_deg 14.544 r_dihedral_angle_3_deg 12.944 r_scangle_it 7.069 r_dihedral_angle_1_deg 6.564 r_scbond_it 4.337 r_mcangle_it 3.095 r_angle_refined_deg 2.439 r_mcbond_it 1.868 r_chiral_restr 0.218
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 29.872 r_dihedral_angle_4_deg 14.544 r_dihedral_angle_3_deg 12.944 r_scangle_it 7.069 r_dihedral_angle_1_deg 6.564 r_scbond_it 4.337 r_mcangle_it 3.095 r_angle_refined_deg 2.439 r_mcbond_it 1.868 r_chiral_restr 0.218 r_bond_refined_d 0.03 r_gen_planes_refined 0.013 r_bond_other_d r_angle_other_deg r_gen_planes_other r_nbd_refined r_nbd_other r_nbtor_refined r_nbtor_other r_xyhbond_nbd_refined r_xyhbond_nbd_other r_metal_ion_refined r_metal_ion_other r_symmetry_vdw_refined r_symmetry_vdw_other r_symmetry_hbond_refined r_symmetry_hbond_other r_symmetry_metal_ion_refined r_symmetry_metal_ion_other r_mcbond_other r_rigid_bond_restr r_sphericity_free r_sphericity_bonded
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 1391 Nucleic Acid Atoms Solvent Atoms 99 Heterogen Atoms 5
Software Software Software Name Purpose HKL-2000 data collection PHASER phasing REFMAC refinement HKL-2000 data reduction HKL-2000 data scaling