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Crystal structure of ORF157-E86A of Acidianus filamentous virus 1
Starting Model(s) Initial Refinement Model(s) Type Source Accession Code Details experimental model PDB 3II2 PDB ENTRY 3II2
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION, SITTING DROP 8.5 293 1M LiCl2, 0.01M NiCl2, 0.1M Tris, pH 8.5, VAPOR DIFFUSION, SITTING DROP, temperature 293K
Crystal Properties Matthews coefficient Solvent content 2.67 53.99
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 63.876 α = 90 b = 63.876 β = 90 c = 85.352 γ = 120
Symmetry Space Group P 31 2 1
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 CCD ADSC QUANTUM 4 2009-03-14 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON ESRF BEAMLINE ID14-2 0.93 ESRF ID14-2
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 3.3 45 99.9 0.086 21.2 10.3 3286 74
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R Merge I (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 3.3 3.48 100 0.407 5.4 10.7 466
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Starting model Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION MOLECULAR REPLACEMENT THROUGHOUT PDB ENTRY 3II2 3.3 32 3088 180 99.88 0.2582 0.25463 0.279 0.31281 0.3475 RANDOM 45.86
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] 25.44 25.44 -50.88
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 37.671 r_dihedral_angle_4_deg 21.548 r_dihedral_angle_3_deg 19.212 r_dihedral_angle_1_deg 6.965 r_scangle_it 2.07 r_angle_refined_deg 1.427 r_scbond_it 1.152 r_mcangle_it 0.862 r_mcbond_it 0.451 r_chiral_restr 0.092
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 37.671 r_dihedral_angle_4_deg 21.548 r_dihedral_angle_3_deg 19.212 r_dihedral_angle_1_deg 6.965 r_scangle_it 2.07 r_angle_refined_deg 1.427 r_scbond_it 1.152 r_mcangle_it 0.862 r_mcbond_it 0.451 r_chiral_restr 0.092 r_bond_refined_d 0.013 r_gen_planes_refined 0.007
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 1275 Nucleic Acid Atoms Solvent Atoms Heterogen Atoms 1
Software Software Software Name Purpose ADSC data collection REFMAC refinement XDS data reduction SCALA data scaling