☰ Navigation Tabs
Crystal structure of mouse Bcl-xl mutant (R139A) at pH 6.0
Starting Model(s) Initial Refinement Model(s) Type Source Accession Code Details experimental model PDB 1PQ0
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION, HANGING DROP 6 295 1.2M Ammonium sulphate, 0.3M Lithium sulphate, MES, pH 6.0, VAPOR DIFFUSION, HANGING DROP, temperature 295K
Crystal Properties Matthews coefficient Solvent content 1.98 37.94
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 52.497 α = 90 b = 34.721 β = 89.62 c = 95.552 γ = 90
Symmetry Space Group P 1 21 1
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 CCD ADSC QUANTUM 270 mirrors 2008-10-08 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON PAL/PLS BEAMLINE 6C1 1.0000 PAL/PLS 6C1
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) R Sym I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 2.38 50 91.1 0.14 0.34 25 4 13028 12366 39.9
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R Merge I (Observed) R-Sym I (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 2.38 2.47 91.4 0.14 0.34 4.5 3.7 1274
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Starting model Resolution (High) Resolution (Low) Number Reflections (All) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (All) R-Factor (Observed) R-Work (Depositor) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION MOLECULAR REPLACEMENT THROUGHOUT 1PQ0 2.38 35.45 13028 12366 654 91.18 0.2394 0.2394 0.23661 0.2934 0.2546 RANDOM 39.912
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] 0.12 0.03 -0.2 0.09
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 36.146 r_dihedral_angle_3_deg 21.307 r_dihedral_angle_4_deg 18.773 r_dihedral_angle_1_deg 6.926 r_scangle_it 4.563 r_scbond_it 2.892 r_mcangle_it 2.009 r_angle_refined_deg 1.768 r_mcbond_it 1.064 r_chiral_restr 0.126
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 36.146 r_dihedral_angle_3_deg 21.307 r_dihedral_angle_4_deg 18.773 r_dihedral_angle_1_deg 6.926 r_scangle_it 4.563 r_scbond_it 2.892 r_mcangle_it 2.009 r_angle_refined_deg 1.768 r_mcbond_it 1.064 r_chiral_restr 0.126 r_bond_refined_d 0.02 r_gen_planes_refined 0.009
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 2416 Nucleic Acid Atoms Solvent Atoms 10 Heterogen Atoms
Software Software Software Name Purpose HKL-2000 data collection MOLREP phasing REFMAC refinement HKL-2000 data reduction HKL-2000 data scaling