3IF8

Crystal Structure of ZWILCH, a member of the RZZ kinetochore complex


X-RAY DIFFRACTION

Crystallization

Crystalization Experiments
IDMethodpHTemperatureDetails
1VAPOR DIFFUSION, HANGING DROP6.2529310-20% (w/v) PEG3350, 100mM BisTris Propane, 200mM Na thiocyanate, pH6.25, VAPOR DIFFUSION, HANGING DROP, temperature 293K
Crystal Properties
Matthews coefficientSolvent content
2.6753.89

Crystal Data

Unit Cell
Length ( Å )Angle ( ˚ )
a = 86.6α = 90
b = 86.6β = 90
c = 166.89γ = 120
Symmetry
Space GroupP 32 2 1

Diffraction

Diffraction Experiment
ID #Crystal IDScattering TypeData Collection TemperatureDetectorDetector TypeDetailsCollection DateMonochromatorProtocol
11x-ray100CCDADSC QUANTUM 315r2008-09-23MSINGLE WAVELENGTH
Radiation Source
ID #SourceTypeWavelength ListSynchrotron SiteBeamline
1SYNCHROTRONESRF BEAMLINE ID14-40.9795ESRFID14-4

Data Collection

Overall
ID #Resolution (High)Resolution (Low)Percent Possible (Observed)R Merge I (Observed)Net I Over Average Sigma (I)RedundancyNumber Reflections (All)Number Reflections (Observed)Observed Criterion Sigma (F)Observed Criterion Sigma (I)B (Isotropic) From Wilson Plot
12.5544.6899.40.04212.953.592413224132-356.478
Highest Resolution Shell
ID #Resolution (High)Resolution (Low)Percent Possible (All)Percent Possible (Observed)R Merge I (Observed)Mean I Over Sigma (Observed)RedundancyNumber Unique Reflections (All)
2.552.6299.30.3252.33.631734

Refinement

Statistics
Diffraction IDStructure Solution MethodCross Validation methodResolution (High)Resolution (Low)Number Reflections (All)Number Reflections (Observed)Number Reflections (R-Free)Percent Reflections (Observed)R-Factor (All)R-Factor (Observed)R-WorkR-FreeR-Free Selection DetailsMean Isotropic B
X-RAY DIFFRACTIONSADTHROUGHOUT2.5544.682413224132122899.440.2310.2310.2290.274RANDOM48.753
Temperature Factor Modeling
Anisotropic B[1][1]Anisotropic B[1][2]Anisotropic B[1][3]Anisotropic B[2][2]Anisotropic B[2][3]Anisotropic B[3][3]
0.870.440.87-1.31
RMS Deviations
KeyRefinement Restraint Deviation
r_dihedral_angle_2_deg36.848
r_dihedral_angle_3_deg20.515
r_dihedral_angle_4_deg18.382
r_dihedral_angle_1_deg5.871
r_scangle_it2.213
r_angle_refined_deg1.358
r_scbond_it1.349
r_mcangle_it1.301
r_mcbond_it0.731
r_nbtor_refined0.311
RMS Deviations
KeyRefinement Restraint Deviation
r_dihedral_angle_2_deg36.848
r_dihedral_angle_3_deg20.515
r_dihedral_angle_4_deg18.382
r_dihedral_angle_1_deg5.871
r_scangle_it2.213
r_angle_refined_deg1.358
r_scbond_it1.349
r_mcangle_it1.301
r_mcbond_it0.731
r_nbtor_refined0.311
r_symmetry_vdw_refined0.246
r_nbd_refined0.225
r_xyhbond_nbd_refined0.171
r_symmetry_hbond_refined0.113
r_chiral_restr0.09
r_bond_refined_d0.01
r_gen_planes_refined0.004
Non-Hydrogen Atoms Used in Refinement
Non-Hydrogen AtomsNumber
Protein Atoms3969
Nucleic Acid Atoms
Solvent Atoms37
Heterogen Atoms

Software

Software
Software NamePurpose
XSCALEdata scaling
SHARPphasing
SOLOMONphasing
REFMACrefinement
PDB_EXTRACTdata extraction
XDSdata scaling